Diverse patterns of molecular changes in the mechano-responsiveness of focal adhesions

por Malik-Sheriff, Rahuman S., Imtiaz, Sarah, Grecco, Hernán E., Zamir, Eli
Publicado 2018

Path4Drug: Data Science Workflow for Identification of Tissue-Specific Biological Pathways Modulated by Toxic Drugs

por Füzi, Barbara, Gurinova, Jana, Hermjakob, Henning, Ecker, Gerhard F., Sheriff, Rahuman
Publicado 2021

Positive Feedback Keeps Duration of Mitosis Temporally Insulated from Upstream Cell-Cycle Events

por Araujo, Ana Rita, Gelens, Lendert, Sheriff, Rahuman S.M., Santos, Silvia D.M.
Publicado 2016

KNIME workflow for retrieving causal drug and protein interactions, building networks, and performing topological enrichment analysis demonstrated by a DILI case study

por Füzi, Barbara, Malik-Sheriff, Rahuman S., Manners, Emma J., Hermjakob, Henning, Ecker, Gerhard F.
Publicado 2022

Uncovering distinct protein-network topologies in heterogeneous cell populations

por Wieczorek, Jakob, Malik-Sheriff, Rahuman S, Fermin, Yessica, Grecco, Hernán E, Zamir, Eli, Ickstadt, Katja
Publicado 2015

BioModels Parameters: a treasure trove of parameter values from published systems biology models

por Glont, Mihai, Arankalle, Chinmay, Tiwari, Krishna, Nguyen, Tung V N, Hermjakob, Henning, Malik-Sheriff, Rahuman S
Publicado 2020

Highly Multiplexed Imaging Uncovers Changes in Compositional Noise within Assembling Focal Adhesions

por Harizanova, Jana, Fermin, Yessica, Malik-Sheriff, Rahuman S., Wieczorek, Jakob, Ickstadt, Katja, Grecco, Hernán E., Zamir, Eli
Publicado 2016

Biased numerical cognition impairs economic decision‐making in Parkinson's disease

por Arshad, Qadeer, Bonsu, Angela, Lobo, Rhannon, Fluri, Anne‐Sophie, Sheriff, Rahuman, Bain, Peter, Pavese, Nicola, Bronstein, Adolfo M.
Publicado 2017

The European Bioinformatics Institute (EMBL-EBI) in 2021

por Cantelli, Gaia, Bateman, Alex, Brooksbank, Cath, Petrov, Anton I, Malik-Sheriff, Rahuman S, Ide-Smith, Michele, Hermjakob, Henning, Flicek, Paul, Apweiler, Rolf, Birney, Ewan, McEntyre, Johanna
Publicado 2021

GATA3 Mediates a Fast, Irreversible Commitment to BMP4-Driven Differentiation in Human Embryonic Stem Cells

por Gunne-Braden, Alexandra, Sullivan, Adrienne, Gharibi, Borzo, Sheriff, Rahuman S.M., Maity, Alok, Wang, Yi-Fang, Edwards, Amelia, Jiang, Ming, Howell, Michael, Goldstone, Robert, Wollman, Roy, East, Philip, Santos, Silvia D.M.
Publicado 2020

Best Practices to Maximize the Use and Reuse of Quantitative and Systems Pharmacology Models: Recommendations From the United Kingdom Quantitative and Systems Pharmacology Network

por Cucurull‐Sanchez, Lourdes, Chappell, Michael J., Chelliah, Vijayalakshmi, Amy Cheung, S. Y., Derks, Gianne, Penney, Mark, Phipps, Alex, Malik‐Sheriff, Rahuman S., Timmis, Jon, Tindall, Marcus J., van der Graaf, Piet H., Vicini, Paolo, Yates, James W. T.
Publicado 2019

Reproducibility in systems biology modelling

por Tiwari, Krishna, Kananathan, Sarubini, Roberts, Matthew G, Meyer, Johannes P, Sharif Shohan, Mohammad Umer, Xavier, Ashley, Maire, Matthieu, Zyoud, Ahmad, Men, Jinghao, Ng, Szeyi, Nguyen, Tung V N, Glont, Mihai, Hermjakob, Henning, Malik‐Sheriff, Rahuman S
Publicado 2021

Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility

por Karr, Jonathan, Malik-Sheriff, Rahuman S., Osborne, James, Gonzalez-Parra, Gilberto, Forgoston, Eric, Bowness, Ruth, Liu, Yaling, Thompson, Robin, Garira, Winston, Barhak, Jacob, Rice, John, Torres, Marcella, Dobrovolny, Hana M., Tang, Tingting, Waites, William, Glazier, James A., Faeder, James R., Kulesza, Alexander
Publicado 2022

BioModels: expanding horizons to include more modelling approaches and formats

por Glont, Mihai, Nguyen, Tung V N, Graesslin, Martin, Hälke, Robert, Ali, Raza, Schramm, Jochen, Wimalaratne, Sarala M, Kothamachu, Varun B, Rodriguez, Nicolas, Swat, Maciej J, Eils, Jurgen, Eils, Roland, Laibe, Camille, Malik-Sheriff, Rahuman S, Chelliah, Vijayalakshmi, Le Novère, Nicolas, Hermjakob, Henning
Publicado 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

por Hucka, Michael, Bergmann, Frank T., Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., König, Matthias, Novère, Nicolas Le, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Sheriff, Rahuman, Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J., Zhang, Fengkai
Publicado 2019

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

por Waltemath, Dagmar, Golebiewski, Martin, Blinov, Michael L, Gleeson, Padraig, Hermjakob, Henning, Hucka, Michael, Inau, Esther Thea, Keating, Sarah M, König, Matthias, Krebs, Olga, Malik-Sheriff, Rahuman S, Nickerson, David, Oberortner, Ernst, Sauro, Herbert M, Schreiber, Falk, Smith, Lucian, Stefan, Melanie I, Wittig, Ulrike, Myers, Chris J
Publicado 2020

BioModels—15 years of sharing computational models in life science

por Malik-Sheriff, Rahuman S, Glont, Mihai, Nguyen, Tung V N, Tiwari, Krishna, Roberts, Matthew G, Xavier, Ashley, Vu, Manh T, Men, Jinghao, Maire, Matthieu, Kananathan, Sarubini, Fairbanks, Emma L, Meyer, Johannes P, Arankalle, Chinmay, Varusai, Thawfeek M, Knight-Schrijver, Vincent, Li, Lu, Dueñas-Roca, Corina, Dass, Gaurhari, Keating, Sarah M, Park, Young M, Buso, Nicola, Rodriguez, Nicolas, Hucka, Michael, Hermjakob, Henning
Publicado 2020

Systems Biology in ELIXIR: modelling in the spotlight

por Martins dos Santos, Vitor, Anton, Mihail, Szomolay, Barbara, Ostaszewski, Marek, Arts, Ilja, Benfeitas, Rui, Dominguez Del Angel, Victoria, Ferk, Polonca, Fey, Dirk, Goble, Carole, Golebiewski, Martin, Gruden, Kristina, Heil, Katharina F., Hermjakob, Henning, Kahlem, Pascal, Klapa, Maria I., Koehorst, Jasper, Kolodkin, Alexey, Kutmon, Martina, Leskošek, Brane, Moretti, Sébastien, Müller, Wolfgang, Pagni, Marco, Rezen, Tadeja, Rocha, Miguel, Rozman, Damjana, Šafránek, David, Sheriff, Rahuman S. Malik, Suarez Diez, Maria, Van Steen, Kristel, Westerhoff, Hans V, Wittig, Ulrike, Wolstencroft, Katherine, Zupanic, Anze, Evelo, Chris T., Hancock, John M.
Publicado 2022

SBML Level 3: an extensible format for the exchange and reuse of biological models

por Keating, Sarah M, Waltemath, Dagmar, König, Matthias, Zhang, Fengkai, Dräger, Andreas, Chaouiya, Claudine, Bergmann, Frank T, Finney, Andrew, Gillespie, Colin S, Helikar, Tomáš, Hoops, Stefan, Malik‐Sheriff, Rahuman S, Moodie, Stuart L, Moraru, Ion I, Myers, Chris J, Naldi, Aurélien, Olivier, Brett G, Sahle, Sven, Schaff, James C, Smith, Lucian P, Swat, Maciej J, Thieffry, Denis, Watanabe, Leandro, Wilkinson, Darren J, Blinov, Michael L, Begley, Kimberly, Faeder, James R, Gómez, Harold F, Hamm, Thomas M, Inagaki, Yuichiro, Liebermeister, Wolfram, Lister, Allyson L, Lucio, Daniel, Mjolsness, Eric, Proctor, Carole J, Raman, Karthik, Rodriguez, Nicolas, Shaffer, Clifford A, Shapiro, Bruce E, Stelling, Joerg, Swainston, Neil, Tanimura, Naoki, Wagner, John, Meier‐Schellersheim, Martin, Sauro, Herbert M, Palsson, Bernhard, Bolouri, Hamid, Kitano, Hiroaki, Funahashi, Akira, Hermjakob, Henning, Doyle, John C, Hucka, Michael
Publicado 2020

MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020