Putative cis-Regulatory Elements Associated with Heat Shock Genes Activated During Excystation of Cryptosporidium parvum

por Cohn, Benjamin, Manque, Patricio, Lara, Ana M., Serrano, Myrna, Sheth, Nihar, Buck, Gregory
Publicado 2010

Comprehensive splice-site analysis using comparative genomics

por Sheth, Nihar, Roca, Xavier, Hastings, Michelle L., Roeder, Ted, Krainer, Adrian R., Sachidanandam, Ravi
Publicado 2006

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

por Parikh, Hardik I., Koparde, Vishal N., Bradley, Steven P., Buck, Gregory A., Sheth, Nihar U.
Publicado 2016

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

por Martin, John, Sykes, Sean, Young, Sarah, Kota, Karthik, Sanka, Ravi, Sheth, Nihar, Orvis, Joshua, Sodergren, Erica, Wang, Zhengyuan, Weinstock, George M., Mitreva, Makedonka
Publicado 2012

Species-level classification of the vaginal microbiome

por Fettweis, Jennifer M, Serrano, Myrna G, Sheth, Nihar U, Mayer, Carly M, Glascock, Abigail L, Brooks, J Paul, Jefferson, Kimberly K, Buck, Gregory A
Publicado 2012

Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice

por O’Brien, Megan A., Weston, Rory M., Sheth, Nihar U., Bradley, Steven, Bigbee, John, Pandey, Ashutosh, Williams, Robert W., Wolstenholme, Jennifer T., Miles, Michael F.
Publicado 2018

Rare mutations and potentially damaging missense variants in genes encoding fibrillar collagens and proteins involved in their production are candidates for risk for preterm premat...

por Modi, Bhavi P., Teves, Maria E., Pearson, Laurel N., Parikh, Hardik I., Chaemsaithong, Piya, Sheth, Nihar U., York, Timothy P., Romero, Roberto, Strauss, Jerome F.
Publicado 2017

An Emerging Mycoplasma Associated with Trichomoniasis, Vaginal Infection and Disease

por Fettweis, Jennifer M., Serrano, Myrna G., Huang, Bernice, Brooks, J. Paul, Glascock, Abigail L., Sheth, Nihar U., Strauss, Jerome F., Jefferson, Kimberly K., Buck, Gregory A.
Publicado 2014

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

por Brooks, J Paul, Edwards, David J, Harwich, Michael D, Rivera, Maria C, Fettweis, Jennifer M, Serrano, Myrna G, Reris, Robert A, Sheth, Nihar U, Huang, Bernice, Girerd, Philippe, Strauss, Jerome F, Jefferson, Kimberly K, Buck, Gregory A
Publicado 2015

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity

por Abdelmaksoud, Abdallah A., Girerd, Philippe H., Garcia, Erin M., Brooks, J. Paul, Leftwich, Lauren M., Sheth, Nihar U., Bradley, Steven P., Serrano, Myrna G., Fettweis, Jennifer M., Huang, Bernice, Strauss, Jerome F., Buck, Gregory A., Jefferson, Kimberly K.
Publicado 2017

In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiolog...

por Jameson-Lee, Max, Koparde, Vishal, Griffith, Phil, Scalora, Allison F., Sampson, Juliana K., Khalid, Haniya, Sheth, Nihar U., Batalo, Michael, Serrano, Myrna G., Roberts, Catherine H., Hess, Michael L., Buck, Gregory A., Neale, Michael C., Manjili, Masoud H., Toor, Amir Ahmed
Publicado 2014

Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following ste...

por Koparde, Vishal, Abdul Razzaq, Badar, Suntum, Tara, Sabo, Roy, Scalora, Allison, Serrano, Myrna, Jameson-Lee, Max, Hall, Charles, Kobulnicky, David, Sheth, Nihar, Feltz, Juliana, Contaifer, Daniel, Wijesinghe, Dayanjan, Reed, Jason, Roberts, Catherine, Qayyum, Rehan, Buck, Gregory, Neale, Michael, Toor, Amir
Publicado 2017

Stem Cell Transplantation as a Dynamical System: Are Clinical Outcomes Deterministic?

por Toor, Amir A., Kobulnicky, Jared D., Salman, Salman, Roberts, Catherine H., Jameson-Lee, Max, Meier, Jeremy, Scalora, Allison, Sheth, Nihar, Koparde, Vishal, Serrano, Myrna, Buck, Gregory A., Clark, William B., McCarty, John M., Chung, Harold M., Manjili, Masoud H., Sabo, Roy T., Neale, Michael C.
Publicado 2014

The vaginal microbiome and preterm birth

por Fettweis, Jennifer M., Serrano, Myrna G., Brooks, J. Paul, Edwards, David J., Girerd, Philippe H., Parikh, Hardik I., Huang, Bernice, Arodz, Tom J., Edupuganti, Laahirie, Glascock, Abigail L., Xu, Jie, Jimenez, Nicole R., Vivadelli, Stephany C., Fong, Stephen S., Sheth, Nihar U., Jean, Sophonie, Lee, Vladimir, Bokhari, Yahya A., Lara, Ana M., Mistry, Shreni D., Duckworth, Robert A., Bradley, Steven P., Koparde, Vishal N., Orenda, X. Valentine, Milton, Sarah H., Rozycki, Sarah K., Matveyev, Andrey V., Wright, Michelle L., Huzurbazar, Snehalata V., Jackson, Eugenie M., Smirnova, Ekaterina, Korlach, Jonas, Tsai, Yu-Chih, Dickinson, Molly R., Brooks, Jamie L., Drake, Jennifer I., Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Wijesooriya, N. Romesh, Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Buck, Gregory A.
Publicado 2019

A framework for human microbiome research

por Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asif T., Earl, Ashlee M., FitzGerald, Michael G., Fulton, Robert S., Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A., Madupu, Ramana, Magrini, Vincent, Martin, John C., Mitreva, Makedonka, Muzny, Donna M., Sodergren, Erica J., Versalovic, James, Wollam, Aye M., Worley, Kim C., Wortman, Jennifer R., Young, Sarah K., Zeng, Qiandong, Aagaard, Kjersti M., Abolude, Olukemi O., Allen-Vercoe, Emma, Alm, Eric J., Alvarado, Lucia, Andersen, Gary L., Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M., Armitage, Gary, Arze, Cesar A., Ayvaz, Tulin, Baker, Carl C., Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J., Bloom, Toby, Vivien Bonazzi, J., Brooks, Paul, Buck, Gregory A., Buhay, Christian J., Busam, Dana A., Campbell, Joseph L., Canon, Shane R., Cantarel, Brandi L., Chain, Patrick S., Chen, I-Min A., Chen, Lei, Chhibba, Shaila, Chu, Ken, Ciulla, Dawn M., Clemente, Jose C., Clifton, Sandra W., Conlan, Sean, Crabtree, Jonathan, Cutting, Mary A., Davidovics, Noam J., Davis, Catherine C., DeSantis, Todd Z., Deal, Carolyn, Delehaunty, Kimberley D., Dewhirst, Floyd E., Deych, Elena, Ding, Yan, Dooling, David J., Dugan, Shannon P., Dunne, Wm. Michael, Durkin, A. Scott, Edgar, Robert C., Erlich, Rachel L., Farmer, Candace N., Farrell, Ruth M., Faust, Karoline, Feldgarden, Michael, Felix, Victor M., Fisher, Sheila, Fodor, Anthony A., Forney, Larry, Foster, Leslie, Di Francesco, Valentina, Friedman, Jonathan, Friedrich, Dennis C., Fronick, Catrina C., Fulton, Lucinda L., Gao, Hongyu, Garcia, Nathalia, Giannoukos, Georgia, Giblin, Christina, Giovanni, Maria Y., Goldberg, Jonathan M., Goll, Johannes, Gonzalez, Antonio, Griggs, Allison, Gujja, Sharvari, Haas, Brian J., Hamilton, Holli A., Harris, Emily L., Hepburn, Theresa A., Herter, Brandi, Hoffmann, Diane E., Holder, Michael E., Howarth, Clinton, Huang, Katherine H., Huse, Susan M., Izard, Jacques, Jansson, Janet K., Jiang, Huaiyang, Jordan, Catherine, Joshi, Vandita, Katancik, James A., Keitel, Wendy A., Kelley, Scott T., Kells, Cristyn, Kinder-Haake, Susan, King, Nicholas B., Knight, Rob, Knights, Dan, Kong, Heidi H., Koren, Omry, Koren, Sergey, Kota, Karthik C., Kovar, Christie L., Kyrpides, Nikos C., La Rosa, Patricio S., Lee, Sandra L., Lemon, Katherine P., Lennon, Niall, Lewis, Cecil M., Lewis, Lora, Ley, Ruth E., Li, Kelvin, Liolios, Konstantinos, Liu, Bo, Liu, Yue, Lo, Chien-Chi, Lozupone, Catherine A., Lunsford, R. Dwayne, Madden, Tessa, Mahurkar, Anup A., Mannon, Peter J., Mardis, Elaine R., Markowitz, Victor M., Mavrommatis, Konstantinos, McCorrison, Jamison M., McDonald, Daniel, McEwen, Jean, McGuire, Amy L., McInnes, Pamela, Mehta, Teena, Mihindukulasuriya, Kathie A., Miller, Jason R., Minx, Patrick J., Newsham, Irene, Nusbaum, Chad, O’Laughlin, Michelle, Orvis, Joshua, Pagani, Ioanna, Palaniappan, Krishna, Patel, Shital M., Pearson, Matthew, Peterson, Jane, Podar, Mircea, Pohl, Craig, Pollard, Katherine S., Priest, Margaret E., Proctor, Lita M., Qin, Xiang, Raes, Jeroen, Ravel, Jacques, Reid, Jeffrey G., Rho, Mina, Rhodes, Rosamond, Riehle, Kevin P., Rivera, Maria C., Rodriguez-Mueller, Beltran, Rogers, Yu-Hui, Ross, Matthew C., Russ, Carsten, Sanka, Ravi K., Pamela Sankar, J., Sathirapongsasuti, Fah, Schloss, Jeffery A., Schloss, Patrick D., Schmidt, Thomas M., Scholz, Matthew, Schriml, Lynn, Schubert, Alyxandria M., Segata, Nicola, Segre, Julia A., Shannon, William D., Sharp, Richard R., Sharpton, Thomas J., Shenoy, Narmada, Sheth, Nihar U., Simone, Gina A., Singh, Indresh, Smillie, Chris S., Sobel, Jack D., Sommer, Daniel D., Spicer, Paul, Sutton, Granger G., Sykes, Sean M., Tabbaa, Diana G., Thiagarajan, Mathangi, Tomlinson, Chad M., Torralba, Manolito, Treangen, Todd J., Truty, Rebecca M., Vishnivetskaya, Tatiana A., Walker, Jason, Wang, Lu, Wang, Zhengyuan, Ward, Doyle V., Warren, Wesley, Watson, Mark A., Wellington, Christopher, Wetterstrand, Kris A., White, James R., Wilczek-Boney, Katarzyna, Wu, Yuan Qing, Wylie, Kristine M., Wylie, Todd, Yandava, Chandri, Ye, Liang, Ye, Yuzhen, Yooseph, Shibu, Youmans, Bonnie P., Zhang, Lan, Zhou, Yanjiao, Zhu, Yiming, Zoloth, Laurie, Zucker, Jeremy D., Birren, Bruce W., Gibbs, Richard A., Highlander, Sarah K., Weinstock, George M., Wilson, Richard K., White, Owen
Publicado 2012