Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy

অনুযায়ী Cesnik, Anthony J., Shortreed, Michael R., Sheynkman, Gloria M., Frey, Brian L., Smith, Lloyd M.
প্রকাশিত 2015

AD-Syn-Net: systematic identification of Alzheimer’s disease-associated mutation and co-mutation vulnerabilities via deep learning

অনুযায়ী Pan, Xingxin, Coban Akdemir, Zeynep H, Gao, Ruixuan, Jiang, Xiaoqian, Sheynkman, Gloria M, Wu, Erxi, Huang, Jason H, Sahni, Nidhi, Yi, S Stephen
প্রকাশিত 2023

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

অনুযায়ী Sheynkman, Gloria M, Johnson, James E, Jagtap, Pratik D, Shortreed, Michael R, Onsongo, Getiria, Frey, Brian L, Griffin, Timothy J, Smith, Lloyd M
প্রকাশিত 2014

Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search

অনুযায়ী Shortreed, Michael R., Wenger, Craig D., Frey, Brian L., Sheynkman, Gloria M., Scalf, Mark, Keller, Mark P., Attie, Alan D., Smith, Lloyd M.
প্রকাশিত 2015

Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics

অনুযায়ী Mehlferber, Madison M., Jeffery, Erin D., Saquing, Jamie, Jordan, Ben T., Sheynkman, Leon, Murali, Mayank, Genet, Gael, Acharya, Bipul R., Hirschi, Karen K., Sheynkman, Gloria M.
প্রকাশিত 2022

Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest

অনুযায়ী Acharya, Bipul R, Fang, Jennifer S, Jeffery, Erin D, Chavkin, Nicholas W, Genet, Gael, Vasavada, Hema, Nelson, Elizabeth A, Sheynkman, Gloria M, Humphries, Martin J, Hirschi, Karen K
প্রকাশিত 2023

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing

অনুযায়ী Anvar, Seyed Yahya, Allard, Guy, Tseng, Elizabeth, Sheynkman, Gloria M., de Klerk, Eleonora, Vermaat, Martijn, Yin, Raymund H., Johansson, Hans E., Ariyurek, Yavuz, den Dunnen, Johan T., Turner, Stephen W., ‘t Hoen, Peter A. C.
প্রকাশিত 2018

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

অনুযায়ী Sheynkman, Gloria M., Tuttle, Katharine S., Laval, Florent, Tseng, Elizabeth, Underwood, Jason G., Yu, Liang, Dong, Da, Smith, Melissa L., Sebra, Robert, Willems, Luc, Hao, Tong, Calderwood, Michael A., Hill, David E., Vidal, Marc
প্রকাশিত 2020

Endothelial cell cycle state determines propensity for arterial-venous fate

অনুযায়ী Chavkin, Nicholas W., Genet, Gael, Poulet, Mathilde, Jeffery, Erin D., Marziano, Corina, Genet, Nafiisha, Vasavada, Hema, Nelson, Elizabeth A., Acharya, Bipul R., Kour, Anupreet, Aragon, Jordon, McDonnell, Stephanie P., Huba, Mahalia, Sheynkman, Gloria M., Walsh, Kenneth, Hirschi, Karen K.
প্রকাশিত 2022

Enhanced protein isoform characterization through long-read proteogenomics

অনুযায়ী Miller, Rachel M., Jordan, Ben T., Mehlferber, Madison M., Jeffery, Erin D., Chatzipantsiou, Christina, Kaur, Simi, Millikin, Robert J., Dai, Yunxiang, Tiberi, Simone, Castaldi, Peter J., Shortreed, Michael R., Luckey, Chance John, Conesa, Ana, Smith, Lloyd M., Deslattes Mays, Anne, Sheynkman, Gloria M.
প্রকাশিত 2022

Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing

অনুযায়ী Leung, Szi Kay, Jeffries, Aaron R., Castanho, Isabel, Jordan, Ben T., Moore, Karen, Davies, Jonathan P., Dempster, Emma L., Bray, Nicholas J., O’Neill, Paul, Tseng, Elizabeth, Ahmed, Zeshan, Collier, David A., Jeffery, Erin D., Prabhakar, Shyam, Schalkwyk, Leonard, Jops, Connor, Gandal, Michael J., Sheynkman, Gloria M., Hannon, Eilis, Mill, Jonathan
প্রকাশিত 2021

The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets

অনুযায়ী Keller, Mark P., Paul, Pradyut K., Rabaglia, Mary E., Stapleton, Donnie S., Schueler, Kathryn L., Broman, Aimee Teo, Ye, Shuyun Isabella, Leng, Ning, Brandon, Christopher J., Neto, Elias Chaibub, Plaisier, Christopher L., Simonett, Shane P., Kebede, Melkam A., Sheynkman, Gloria M., Klein, Mark A., Baliga, Nitin S., Smith, Lloyd M., Broman, Karl W., Yandell, Brian S., Kendziorski, Christina, Attie, Alan D.
প্রকাশিত 2016

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

অনুযায়ী Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Hasan Çelik, Muhammed, Chen, Ying, Du, Mei R,M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, Brooks, Angela N.
প্রকাশিত 2023

A reference map of the human binary protein interactome

অনুযায়ী Luck, Katja, Kim, Dae-Kyum, Lambourne, Luke, Spirohn, Kerstin, Begg, Bridget E., Bian, Wenting, Brignall, Ruth, Cafarelli, Tiziana, Campos-Laborie, Francisco J., Charloteaux, Benoit, Choi, Dongsic, Coté, Atina G., Daley, Meaghan, Deimling, Steven, Desbuleux, Alice, Dricot, Amélie, Gebbia, Marinella, Hardy, Madeleine F., Kishore, Nishka, Knapp, Jennifer J., Kovács, István A., Lemmens, Irma, Mee, Miles W., Mellor, Joseph C., Pollis, Carl, Pons, Carles, Richardson, Aaron D., Schlabach, Sadie, Teeking, Bridget, Yadav, Anupama, Babor, Mariana, Balcha, Dawit, Basha, Omer, Bowman-Colin, Christian, Chin, Suet-Feung, Choi, Soon Gang, Colabella, Claudia, Coppin, Georges, D’Amata, Cassandra, Ridder, David De, Rouck, Steffi De, Duran-Frigola, Miquel, Ennajdaoui, Hanane, Goebels, Florian, Goehring, Liana, Gopal, Anjali, Haddad, Ghazal, Hatchi, Elodie, Helmy, Mohamed, Jacob, Yves, Kassa, Yoseph, Landini, Serena, Li, Roujia, van Lieshout, Natascha, MacWilliams, Andrew, Markey, Dylan, Paulson, Joseph N., Rangarajan, Sudharshan, Rasla, John, Rayhan, Ashyad, Rolland, Thomas, San-Miguel, Adriana, Shen, Yun, Sheykhkarimli, Dayag, Sheynkman, Gloria M., Simonovsky, Eyal, Taşan, Murat, Tejeda, Alexander, Tropepe, Vincent, Twizere, Jean-Claude, Wang, Yang, Weatheritt, Robert J., Weile, Jochen, Xia, Yu, Yang, Xinping, Yeger-Lotem, Esti, Zhong, Quan, Aloy, Patrick, Bader, Gary D., Rivas, Javier De Las, Gaudet, Suzanne, Hao, Tong, Rak, Janusz, Tavernier, Jan, Hill, David E., Vidal, Marc, Roth, Frederick P., Calderwood, Michael A.
প্রকাশিত 2020