High-quality ChIP-seq analysis of MBD3 in human breast cancer cells

por Shimbo, Takashi, Takaku, Motoki, Wade, Paul A.
Publicado 2016

Aggressive Squamous Cell Carcinoma in a Case of Epidermodysplasia Verruciformis Carrying a TMC6 Splice-site Mutation

por YOKOI, Kazunori, ARASE, Noriko, SHIMBO, Takashi, FUJIMOTO, Manabu, TANEMURA, Atsushi
Publicado 2023

Serum Anti-BPAG1 Auto-Antibody Is a Novel Marker for Human Melanoma

por Shimbo, Takashi, Tanemura, Atsushi, Yamazaki, Takehiko, Tamai, Katsuto, Katayama, Ichiro, Kaneda, Yasufumi
Publicado 2010

Cut-C: cleavage under tethered nuclease for conformational capture

por Shimbo, Takashi, Kawamura, Machika, Wijaya, Edward, Takaki, Eiichi, Kaneda, Yasufumi, Tamai, Katsuto
Publicado 2019

Single-cell transcriptome analysis reveals cellular heterogeneity in mouse intra- and extra articular ligaments

por Ishibashi, Kyota, Ikegami, Kentaro, Shimbo, Takashi, Sasaki, Eiji, Kitayama, Tomomi, Nakamura, Yuzuru, Tsushima, Takahiro, Ishibashi, Yasuyuki, Tamai, Katsuto
Publicado 2022

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4

por Saotome, Mika, Poduval, Deepak Balakrishnan, Grimm, Sara A., Nagornyuk, Aerica, Gunarathna, Sakuntha, Shimbo, Takashi, Wade, Paul A., Takaku, Motoki
Publicado 2023

MBD3 Localizes at Promoters, Gene Bodies and Enhancers of Active Genes

por Shimbo, Takashi, Du, Ying, Grimm, Sara A., Dhasarathy, Archana, Mav, Deepak, Shah, Ruchir R., Shi, Huidong, Wade, Paul A.
Publicado 2013

Chromatin accessibility identifies diversity in mesenchymal stem cells from different tissue origins

por Ho, Yen-Ting, Shimbo, Takashi, Wijaya, Edward, Ouchi, Yuya, Takaki, Eiichi, Yamamoto, Ryoma, Kikuchi, Yasushi, Kaneda, Yasufumi, Tamai, Katsuto
Publicado 2018

CHD4 and the NuRD complex directly control cardiac sarcomere formation

por Wilczewski, Caralynn M., Hepperla, Austin J., Shimbo, Takashi, Wasson, Lauren, Robbe, Zachary L., Davis, Ian J., Wade, Paul A., Conlon, Frank L.
Publicado 2018

GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

por Takaku, Motoki, Grimm, Sara A., Shimbo, Takashi, Perera, Lalith, Menafra, Roberta, Stunnenberg, Hendrik G., Archer, Trevor K., Machida, Shinichi, Kurumizaka, Hitoshi, Wade, Paul A.
Publicado 2016

Longitudinal Single-Cell Transcriptomics Reveals a Role for Serpina3n-Mediated Resolution of Inflammation in a Mouse Colitis Model

por Ho, Yen-Ting, Shimbo, Takashi, Wijaya, Edward, Kitayama, Tomomi, Takaki, Satoshi, Ikegami, Kentaro, Miyashita, Kazuya, Ouchi, Yuya, Takaki, Eiichi, Yamamoto, Ryoma, Kaneda, Yasufumi, Tamai, Katsuto
Publicado 2021

Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci

por Menafra, Roberta, Brinkman, Arie B., Matarese, Filomena, Franci, Gianluigi, Bartels, Stefanie J. J., Nguyen, Luan, Shimbo, Takashi, Wade, Paul A., Hubner, Nina C., Stunnenberg, Hendrik G.
Publicado 2014

Single-cell transcriptome analysis of a rat model of bilateral renal ischemia-reperfusion injury

por Taniguchi, Ayumu, Miyashita, Kazuya, Fukae, Shota, Tanaka, Ryo, Nishida, Mami, Kitayama, Tomomi, Ouchi, Yuya, Shimbo, Takashi, Nakazawa, Shigeaki, Yamanaka, Kazuaki, Imamura, Ryoichi, Tamai, Katsuto, Nonomura, Norio
Publicado 2023

Synthesized HMGB1 peptide attenuates liver inflammation and suppresses fibrosis in mice

por Nojiri, Shunsuke, Tsuchiya, Atsunori, Natsui, Kazuki, Takeuchi, Suguru, Watanabe, Takayuki, Kojima, Yuichi, Watanabe, Yusuke, Kamimura, Hiroteru, Ogawa, Masahiro, Motegi, Satoko, Iwasawa, Takahiro, Sato, Takeki, Kumagai, Masaru, Ishii, Yui, Kitayama, Tomomi, Li, Yu-Tung, Ouchi, Yuya, Shimbo, Takashi, Takamura, Masaaki, Tamai, Katsuto, Terai, Shuji
Publicado 2021

DNA methylation in mice is influenced by genetics as well as sex and life experience

por Grimm, Sara A., Shimbo, Takashi, Takaku, Motoki, Thomas, James W., Auerbach, Scott, Bennett, Brian D., Bucher, John R., Burkholder, Adam B., Day, Frank, Du, Ying, Duncan, Christopher G., French, John E., Foley, Julie F., Li, Jianying, Merrick, B. Alex, Tice, Raymond R., Wang, Tianyuan, Xu, Xiaojiang, Bushel, Pierre R., Fargo, David C., Mullikin, James C., Wade, Paul A.
Publicado 2019