Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling

por Shin, Junha, Lee, Insuk
Publicado 2015

EcoliNet: a database of cofunctional gene network for Escherichia coli

por Kim, Hanhae, Shim, Jung Eun, Shin, Junha, Lee, Insuk
Publicado 2015

Pathway-specific protein domains are predictive for human diseases

por Shim, Jung Eun, Kim, Ji Hyun, Shin, Junha, Lee, Ji Eun, Lee, Insuk
Publicado 2019

YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae

por Kim, Hanhae, Shin, Junha, Kim, Eiru, Kim, Hyojin, Hwang, Sohyun, Shim, Jung Eun, Lee, Insuk
Publicado 2014

WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans

por Cho, Ara, Shin, Junha, Hwang, Sohyun, Kim, Chanyoung, Shim, Hongseok, Kim, Hyojin, Kim, Hanhae, Lee, Insuk
Publicado 2014

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation

por Baur, Brittany, Shin, Junha, Schreiber, Jacob, Zhang, Shilu, Zhang, Yi, Manjunath, Mohith, Song, Jun S., Stafford Noble, William, Roy, Sushmita
Publicado 2023

Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data

por McCalla, Sunnie Grace, Fotuhi Siahpirani, Alireza, Li, Jiaxin, Pyne, Saptarshi, Stone, Matthew, Periyasamy, Viswesh, Shin, Junha, Roy, Sushmita
Publicado 2023

FlyNet: a versatile network prioritization server for the Drosophila community

por Shin, Junha, Yang, Sunmo, Kim, Eiru, Kim, Chan Yeong, Shim, Hongseok, Cho, Ara, Kim, Hyojin, Hwang, Sohyun, Shim, Jung Eun, Lee, Insuk
Publicado 2015

Identification of FMR1-regulated molecular networks in human neurodevelopment

por Li, Meng, Shin, Junha, Risgaard, Ryan D., Parries, Molly J., Wang, Jianyi, Chasman, Deborah, Liu, Shuang, Roy, Sushmita, Bhattacharyya, Anita, Zhao, Xinyu
Publicado 2020

AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species

por Lee, Tak, Yang, Sunmo, Kim, Eiru, Ko, Younhee, Hwang, Sohyun, Shin, Junha, Shim, Jung Eun, Shim, Hongseok, Kim, Hyojin, Kim, Chanyoung, Lee, Insuk
Publicado 2014

RiceNet v2: an improved network prioritization server for rice genes

por Lee, Tak, Oh, Taeyun, Yang, Sunmo, Shin, Junha, Hwang, Sohyun, Kim, Chan Yeong, Kim, Hyojin, Shim, Hongseok, Shim, Jung Eun, Ronald, Pamela C., Lee, Insuk
Publicado 2015

A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

por Shin, Junha, Marx, Harald, Richards, Alicia, Vaneechoutte, Dries, Jayaraman, Dhileepkumar, Maeda, Junko, Chakraborty, Sanhita, Sussman, Michael, Vandepoele, Klaas, Ané, Jean-Michel, Coon, Joshua, Roy, Sushmita
Publicado 2020

Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns

por Iyer, Nisha R., Shin, Junha, Cuskey, Stephanie, Tian, Yucheng, Nicol, Noah R., Doersch, Tessa E., Seipel, Frank, McCalla, Sunnie Grace, Roy, Sushmita, Ashton, Randolph S.
Publicado 2022

Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

por Huang, Kunling, Wu, Yuchang, Shin, Junha, Zheng, Ye, Siahpirani, Alireza Fotuhi, Lin, Yupei, Ni, Zheng, Chen, Jiawen, You, Jing, Keles, Sunduz, Wang, Daifeng, Roy, Sushmita, Lu, Qiongshi
Publicado 2021

Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans

por Kim, Hanhae, Jung, Kwang-Woo, Maeng, Shinae, Chen, Ying-Lien, Shin, Junha, Shim, Jung Eun, Hwang, Sohyun, Janbon, Guilhem, Kim, Taeyup, Heitman, Joseph, Bahn, Yong-Sun, Lee, Insuk
Publicado 2015

TRRUST: a reference database of human transcriptional regulatory interactions

por Han, Heonjong, Shim, Hongseok, Shin, Donghyun, Shim, Jung Eun, Ko, Yunhee, Shin, Junha, Kim, Hanhae, Cho, Ara, Kim, Eiru, Lee, Tak, Kim, Hyojin, Kim, Kyungsoo, Yang, Sunmo, Bae, Dasom, Yun, Ayoung, Kim, Sunphil, Kim, Chan Yeong, Cho, Hyeon Jin, Kang, Byunghee, Shin, Susie, Lee, Insuk
Publicado 2015