Bacteriophages of the Order Crassvirales: What Do We Currently Know about This Keystone Component of the Human Gut Virome?

por Smith, Linda, Goldobina, Ekaterina, Govi, Bianca, Shkoporov, Andrey N.
Publicado 2023

Phage-mediated horizontal gene transfer and its implications for the human gut microbiome

por Borodovich, Tatiana, Shkoporov, Andrey N, Ross, R Paul, Hill, Colin
Publicado 2022

Selective Isolation of Eggerthella lenta from Human Faeces and Characterisation of the Species Prophage Diversity

por Buttimer, Colin, Bottacini, Francesca, Shkoporov, Andrey N., Draper, Lorraine A., Ross, Paul, Hill, Colin
Publicado 2022

RNA Phage Biology in a Metagenomic Era

por Callanan, Julie, Stockdale, Stephen R., Shkoporov, Andrey, Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Publicado 2018

Biases in Viral Metagenomics-Based Detection, Cataloguing and Quantification of Bacteriophage Genomes in Human Faeces, a Review

por Callanan, Julie, Stockdale, Stephen R., Shkoporov, Andrey, Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Publicado 2021

Probing the “Dark Matter” of the Human Gut Phageome: Culture Assisted Metagenomics Enables Rapid Discovery and Host-Linking for Novel Bacteriophages

por Fitzgerald, C. Brian, Shkoporov, Andrey N., Upadrasta, Aditya, Khokhlova, Ekaterina V., Ross, R. Paul, Hill, Colin
Publicado 2021

Draft Genome Sequence of Legionella pneumophila subsp. pneumophila Strain DSM 25199

por Nezam-Abadi, Neda, Turkington, Christopher J. R., Draper, Lorraine A., Shkoporov, Andrey N., Ross, R. Paul, Hill, Colin
Publicado 2023

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

por Fitzgerald, Cormac Brian, Shkoporov, Andrey N., Sutton, Thomas D. S., Chaplin, Andrei V., Velayudhan, Vimalkumar, Ross, R. Paul, Hill, Colin
Publicado 2018

ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis

por Shkoporov, Andrey N., Khokhlova, Ekaterina V., Fitzgerald, C. Brian, Stockdale, Stephen R., Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Publicado 2018

Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis

por Shkoporov, Andrey N., Khokhlova, Ekaterina V., Stephens, Niamh, Hueston, Cara, Seymour, Samuel, Hryckowian, Andrew J., Scholz, Dimitri, Ross, R. Paul, Hill, Colin
Publicado 2021

Temperate bacteriophages infecting the mucin-degrading bacterium Ruminococcus gnavus from the human gut

por Buttimer, Colin, Khokhlova, Ekaterina V., Stein, Lisa, Hueston, Cara M., Govi, Bianca, Draper, Lorraine A., Ross, R. Paul, Shkoporov, Andrey N., Hill, Colin
Publicado 2023

Diverse Bacteriocins Produced by Strains From the Human Milk Microbiota

por Angelopoulou, Angeliki, Warda, Alicja K., O’Connor, Paula M., Stockdale, Stephen R., Shkoporov, Andrey N., Field, Des, Draper, Lorraine A., Stanton, Catherine, Hill, Colin, Ross, R. Paul
Publicado 2020

Leviviricetes: expanding and restructuring the taxonomy of bacteria-infecting single-stranded RNA viruses

por Callanan, Julie, Stockdale, Stephen R., Adriaenssens, Evelien M., Kuhn, Jens H., Rumnieks, Janis, Pallen, Mark J., Shkoporov, Andrey N., Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Publicado 2021

Structural atlas of a human gut crassvirus

por Bayfield, Oliver W., Shkoporov, Andrey N., Yutin, Natalya, Khokhlova, Ekaterina V., Smith, Jake L. R., Hawkins, Dorothy E. D. P., Koonin, Eugene V., Hill, Colin, Antson, Alfred A.
Publicado 2023

Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

por Guerin, Emma, Shkoporov, Andrey N., Stockdale, Stephen R., Comas, Joan Colom, Khokhlova, Ekaterina V., Clooney, Adam G., Daly, Karen M., Draper, Lorraine A., Stephens, Niamh, Scholz, Dimitri, Ross, R. Paul, Hill, Colin
Publicado 2021

Viral biogeography of the mammalian gut and parenchymal organs

por Shkoporov, Andrey N., Stockdale, Stephen R., Lavelle, Aonghus, Kondova, Ivanela, Heuston, Cara, Upadrasta, Aditya, Khokhlova, Ekaterina V., van der Kamp, Imme, Ouwerling, Boudewijn, Draper, Lorraine A., Langermans, Jan A.M., Ross, R Paul, Hill, Colin
Publicado 2022

Impact of a phage cocktail targeting Escherichia coli and Enterococcus faecalis as members of a gut bacterial consortium in vitro and in vivo

por Buttimer, Colin, Sutton, Tom, Colom, Joan, Murray, Ellen, Bettio, Pedro H., Smith, Linda, Bolocan, Andrei S., Shkoporov, Andrey, Oka, Akihiko, Liu, Bo, Herzog, Jeremy W., Sartor, R. Balfour, Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Publicado 2022

Reproducible protocols for metagenomic analysis of human faecal phageomes

por Shkoporov, Andrey N., Ryan, Feargal J., Draper, Lorraine A., Forde, Amanda, Stockdale, Stephen R., Daly, Karen M., McDonnell, Siobhan A., Nolan, James A., Sutton, Thomas D.S., Dalmasso, Marion, McCann, Angela, Ross, R. Paul, Hill, Colin
Publicado 2018

Interpersonal variability of the human gut virome confounds disease signal detection in IBD

por Stockdale, Stephen R., Shkoporov, Andrey N., Khokhlova, Ekaterina V., Daly, Karen M., McDonnell, Siobhan A., O’ Regan, Orla, Nolan, James A., Sutton, Thomas D. S., Clooney, Adam G., Ryan, Feargal J., Sheehan, Donal, Lavelle, Aonghus, Draper, Lorraine A., Shanahan, Fergus, Ross, R. Paul, Hill, Colin
Publicado 2023

Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee

por Turner, Dann, Shkoporov, Andrey N., Lood, Cédric, Millard, Andrew D., Dutilh, Bas E., Alfenas-Zerbini, Poliane, van Zyl, Leonardo J., Aziz, Ramy K., Oksanen, Hanna M., Poranen, Minna M., Kropinski, Andrew M., Barylski, Jakub, Brister, J Rodney, Chanisvili, Nina, Edwards, Rob A., Enault, François, Gillis, Annika, Knezevic, Petar, Krupovic, Mart, Kurtböke, Ipek, Kushkina, Alla, Lavigne, Rob, Lehman, Susan, Lobocka, Malgorzata, Moraru, Cristina, Moreno Switt, Andrea, Morozova, Vera, Nakavuma, Jesca, Reyes Muñoz, Alejandro, Rūmnieks, Jānis, Sarkar, BL, Sullivan, Matthew B., Uchiyama, Jumpei, Wittmann, Johannes, Yigang, Tong, Adriaenssens, Evelien M.
Publicado 2023