Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies

por Yao, Tony, Shooshtari, Parisa, Haeryfar, S. M. Mansour
Publicado 2020

Data reduction for spectral clustering to analyze high throughput flow cytometry data

por Zare, Habil, Shooshtari, Parisa, Gupta, Arvind, Brinkman, Ryan R
Publicado 2010

Flow cytometry data standards

por Spidlen, Josef, Shooshtari, Parisa, Kollmann, Tobias R, Brinkman, Ryan R
Publicado 2011

Analysis of TERT Isoforms across TCGA, GTEx and CCLE Datasets

por Subasri, Mathushan, Shooshtari, Parisa, Watson, Andrew J., Betts, Dean H.
Publicado 2021

TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool

por Christensen, Erik, Naidas, Alaine, Chen, David, Husic, Mia, Shooshtari, Parisa
Publicado 2022

Network Analysis of Genome-Wide Selective Constraint Reveals a Gene Network Active in Early Fetal Brain Intolerant of Mutation

por Choi, Jinmyung, Shooshtari, Parisa, Samocha, Kaitlin E., Daly, Mark J., Cotsapas, Chris
Publicado 2016

The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis

por Salnikov, Mikhail Y., Wang, Eric, Christensen, Erik, Prusinkiewicz, Martin A., Shooshtari, Parisa, Mymryk, Joe S.
Publicado 2023

Single-Cell Chromatin Accessibility Data Combined with GWAS Improves Detection of Relevant Cell Types in 59 Complex Phenotypes

por Das, Akash Chandra, Foroutan, Aidin, Qian, Brian, Hosseini Naghavi, Nader, Shabani, Kayvan, Shooshtari, Parisa
Publicado 2022

Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data

por Shooshtari, Parisa, Feng, Samantha, Nelakuditi, Viswateja, Asakereh, Reza, Hosseini Naghavi, Nader, Foong, Justin, Brudno, Michael, Cotsapas, Chris
Publicado 2023

Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets

por Mahalanabis, Alaina, Turinsky, Andrei L., Husić, Mia, Christensen, Erik, Luo, Ping, Naidas, Alaine, Brudno, Michael, Pugh, Trevor, Ramani, Arun K., Shooshtari, Parisa
Publicado 2022

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets

por Christensen, Erik, Luo, Ping, Turinsky, Andrei, Husić, Mia, Mahalanabis, Alaina, Naidas, Alaine, Diaz-Mejia, Juan Javier, Brudno, Michael, Pugh, Trevor, Ramani, Arun, Shooshtari, Parisa
Publicado 2022

CReSCENT: CanceR Single Cell ExpressioN Toolkit

por Mohanraj, Suluxan, Díaz-Mejía, J Javier, Pham, Martin D, Elrick, Hillary, Husić, Mia, Rashid, Shaikh, Luo, Ping, Bal, Prabnur, Lu, Kevin, Patel, Samarth, Mahalanabis, Alaina, Naidas, Alaine, Christensen, Erik, Croucher, Danielle, Richards, Laura M, Shooshtari, Parisa, Brudno, Michael, Ramani, Arun K, Pugh, Trevor J
Publicado 2020