Effects of Sample Selection Bias on the Accuracy of Population Structure and Ancestry Inference

por Shringarpure, Suyash, Xing, Eric P.
Publicado 2014

Privacy Risks from Genomic Data-Sharing Beacons

por Shringarpure, Suyash S., Bustamante, Carlos D.
Publicado 2015

StructHDP: automatic inference of number of clusters and population structure from admixed genotype data

por Shringarpure, Suyash, Won, Daegun, Xing, Eric P.
Publicado 2011

CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing

por Ray, Pradipta, Shringarpure, Suyash, Kolar, Mladen, Xing, Eric P.
Publicado 2008

The inference of sex-biased human demography from whole-genome data

por Musharoff, Shaila, Shringarpure, Suyash, Bustamante, Carlos D., Ramachandran, Sohini
Publicado 2019

Efficient analysis of large datasets and sex bias with ADMIXTURE

por Shringarpure, Suyash S., Bustamante, Carlos D., Lange, Kenneth, Alexander, David H.
Publicado 2016

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes

por Shringarpure, Suyash S., Carroll, Andrew, De La Vega, Francisco M., Bustamante, Carlos D.
Publicado 2015

Fast and Robust Identity-by-Descent Inference with the Templated Positional Burrows–Wheeler Transform

por Freyman, William A, McManus, Kimberly F, Shringarpure, Suyash S, Jewett, Ethan M, Bryc, Katarzyna, Auton, Adam
Publicado 2020

The Great Migration and African-American Genomic Diversity

por Baharian, Soheil, Barakatt, Maxime, Gignoux, Christopher R., Shringarpure, Suyash, Errington, Jacob, Blot, William J., Bustamante, Carlos D., Kenny, Eimear E., Williams, Scott M., Aldrich, Melinda C., Gravel, Simon
Publicado 2016

A Polygenic Score for Type 2 Diabetes Improves Risk Stratification Beyond Current Clinical Screening Factors in an Ancestrally Diverse Sample

por Ashenhurst, James R., Sazonova, Olga V., Svrchek, Olivia, Detweiler, Stacey, Kita, Ryosuke, Babalola, Liz, McIntyre, Matthew, Aslibekyan, Stella, Fontanillas, Pierre, Shringarpure, Suyash, Pollard, Jeffrey D., Koelsch, Bertram L.
Publicado 2022

Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data

por Shringarpure, Suyash S, Mathias, Rasika A, Hernandez, Ryan D, O’Connor, Timothy D, Szpiech, Zachary A, Torres, Raul, De La Vega, Francisco M, Bustamante, Carlos D, Barnes, Kathleen C, Taub, Margaret A
Publicado 2017

Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies

por Wojcik, Genevieve L., Fuchsberger, Christian, Taliun, Daniel, Welch, Ryan, Martin, Alicia R, Shringarpure, Suyash, Carlson, Christopher S., Abecasis, Goncalo, Kang, Hyun Min, Boehnke, Michael, Bustamante, Carlos D., Gignoux, Christopher R., Kenny, Eimear E.
Publicado 2018

A population-specific reference panel for improved genotype imputation in African Americans

por O’Connell, Jared, Yun, Taedong, Moreno, Meghan, Li, Helen, Litterman, Nadia, Kolesnikov, Alexey, Noblin, Elizabeth, Chang, Pi-Chuan, Shastri, Anjali, Dorfman, Elizabeth H., Shringarpure, Suyash, Auton, Adam, Carroll, Andrew, McLean, Cory Y.
Publicado 2021

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks

por Raisaro, Jean Louis, Tramèr, Florian, Ji, Zhanglong, Bu, Diyue, Zhao, Yongan, Carey, Knox, Lloyd, David, Sofia, Heidi, Baker, Dixie, Flicek, Paul, Shringarpure, Suyash, Bustamante, Carlos, Wang, Shuang, Jiang, Xiaoqian, Ohno-Machado, Lucila, Tang, Haixu, Wang, XiaoFeng, Hubaux, Jean-Pierre
Publicado 2017

Bi-Ancestral Depression GWAS in the Million Veteran Program and Meta-Analysis in >1.2 Million Subjects Highlights New Therapeutic Directions

por Levey, Daniel F., Stein, Murray B., Wendt, Frank R., Pathak, Gita A., Zhou, Hang, Aslan, Mihaela, Quaden, Rachel, Harrington, Kelly M., Nuñez, Yaira Z., Overstreet, Cassie, Radhakrishnan, Krishnan, Sanacora, Gerard, McIntosh, Andrew M., Shi, Jingchunzi, Shringarpure, Suyash S., Concato, John, Polimanti, Renato, Gelernter, Joel
Publicado 2021

Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders

por Eijsbouts, Chris, Zheng, Tenghao, Kennedy, Nicholas A., Bonfiglio, Ferdinando, Anderson, Carl A., Moutsianas, Loukas, Holliday, Joanne, Shi, Jingchunzi, Shringarpure, Suyash, Voda, Alexandru-Ioan, Farrugia, Gianrico, Franke, Andre, Hübenthal, Matthias, Abecasis, Gonçalo, Zawistowski, Matthew, Skogholt, Anne Heidi, Ness-Jensen, Eivind, Hveem, Kristian, Esko, Tõnu, Teder-Laving, Maris, Zhernakova, Alexandra, Camilleri, Michael, Boeckxstaens, Guy, Whorwell, Peter J., Spiller, Robin, McVean, Gil, D’Amato, Mauro, Jostins, Luke, Parkes, Miles
Publicado 2021

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome

por Mathias, Rasika Ann, Taub, Margaret A., Gignoux, Christopher R., Fu, Wenqing, Musharoff, Shaila, O'Connor, Timothy D., Vergara, Candelaria, Torgerson, Dara G., Pino-Yanes, Maria, Shringarpure, Suyash S., Huang, Lili, Rafaels, Nicholas, Boorgula, Meher Preethi, Johnston, Henry Richard, Ortega, Victor E., Levin, Albert M., Song, Wei, Torres, Raul, Padhukasahasram, Badri, Eng, Celeste, Mejia-Mejia, Delmy-Aracely, Ferguson, Trevor, Qin, Zhaohui S., Scott, Alan F., Yazdanbakhsh, Maria, Wilson, James G., Marrugo, Javier, Lange, Leslie A., Kumar, Rajesh, Avila, Pedro C., Williams, L. Keoki, Watson, Harold, Ware, Lorraine B., Olopade, Christopher, Olopade, Olufunmilayo, Oliveira, Ricardo, Ober, Carole, Nicolae, Dan L., Meyers, Deborah, Mayorga, Alvaro, Knight-Madden, Jennifer, Hartert, Tina, Hansel, Nadia N., Foreman, Marilyn G., Ford, Jean G., Faruque, Mezbah U., Dunston, Georgia M., Caraballo, Luis, Burchard, Esteban G., Bleecker, Eugene, Araujo, Maria Ilma, Herrera-Paz, Edwin Francisco, Gietzen, Kimberly, Grus, Wendy E., Bamshad, Michael, Bustamante, Carlos D., Kenny, Eimear E., Hernandez, Ryan D., Beaty, Terri H., Ruczinski, Ingo, Akey, Joshua, Barnes, Kathleen C.
Publicado 2016

Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort

por Waszak, Sebastian M, Northcott, Paul A, Buchhalter, Ivo, Robinson, Giles W, Sutter, Christian, Groebner, Susanne, Grund, Kerstin B, Brugières, Laurence, Jones, David T W, Pajtler, Kristian W, Morrissy, A Sorana, Kool, Marcel, Sturm, Dominik, Chavez, Lukas, Ernst, Aurelie, Brabetz, Sebastian, Hain, Michael, Zichner, Thomas, Segura-Wang, Maia, Weischenfeldt, Joachim, Rausch, Tobias, Mardin, Balca R, Zhou, Xin, Baciu, Cristina, Lawerenz, Christian, Chan, Jennifer A, Varlet, Pascale, Guerrini-Rousseau, Lea, Fults, Daniel W, Grajkowska, Wiesława, Hauser, Peter, Jabado, Nada, Ra, Young-Shin, Zitterbart, Karel, Shringarpure, Suyash S, De La Vega, Francisco M, Bustamante, Carlos D, Ng, Ho-Keung, Perry, Arie, MacDonald, Tobey J, Hernáiz Driever, Pablo, Bendel, Anne E, Bowers, Daniel C, McCowage, Geoffrey, Chintagumpala, Murali M, Cohn, Richard, Hassall, Timothy, Fleischhack, Gudrun, Eggen, Tone, Wesenberg, Finn, Feychting, Maria, Lannering, Birgitta, Schüz, Joachim, Johansen, Christoffer, Andersen, Tina V, Röösli, Martin, Kuehni, Claudia E, Grotzer, Michael, Kjaerheim, Kristina, Monoranu, Camelia M, Archer, Tenley C, Duke, Elizabeth, Pomeroy, Scott L, Shelagh, Redmond, Frank, Stephan, Sumerauer, David, Scheurlen, Wolfram, Ryzhova, Marina V, Milde, Till, Kratz, Christian P, Samuel, David, Zhang, Jinghui, Solomon, David A, Marra, Marco, Eils, Roland, Bartram, Claus R, von Hoff, Katja, Rutkowski, Stefan, Ramaswamy, Vijay, Gilbertson, Richard J, Korshunov, Andrey, Taylor, Michael D, Lichter, Peter, Malkin, David, Gajjar, Amar, Korbel, Jan O, Pfister, Stefan M
Publicado 2018

European and multi-ancestry genome-wide association meta-analysis of atopic dermatitis highlights importance of systemic immune regulation

por Budu-Aggrey, Ashley, Kilanowski, Anna, Sobczyk, Maria K., Shringarpure, Suyash S., Mitchell, Ruth, Reis, Kadri, Reigo, Anu, Mägi, Reedik, Nelis, Mari, Tanaka, Nao, Brumpton, Ben M., Thomas, Laurent F., Sole-Navais, Pol, Flatley, Christopher, Espuela-Ortiz, Antonio, Herrera-Luis, Esther, Lominchar, Jesus V. T., Bork-Jensen, Jette, Marenholz, Ingo, Arnau-Soler, Aleix, Jeong, Ayoung, Fawcett, Katherine A., Baurecht, Hansjorg, Rodriguez, Elke, Alves, Alexessander Couto, Kumar, Ashish, Sleiman, Patrick M., Chang, Xiao, Medina-Gomez, Carolina, Hu, Chen, Xu, Cheng-jian, Qi, Cancan, El-Heis, Sarah, Titcombe, Philip, Antoun, Elie, Fadista, João, Wang, Carol A., Thiering, Elisabeth, Wu, Baojun, Kress, Sara, Kothalawala, Dilini M., Kadalayil, Latha, Duan, Jiasong, Zhang, Hongmei, Hadebe, Sabelo, Hoffmann, Thomas, Jorgenson, Eric, Choquet, Hélène, Risch, Neil, Njølstad, Pål, Andreassen, Ole A., Johansson, Stefan, Almqvist, Catarina, Gong, Tong, Ullemar, Vilhelmina, Karlsson, Robert, Magnusson, Patrik K. E., Szwajda, Agnieszka, Burchard, Esteban G., Thyssen, Jacob P., Hansen, Torben, Kårhus, Line L., Dantoft, Thomas M., Jeanrenaud, Alexander C.S.N., Ghauri, Ahla, Arnold, Andreas, Homuth, Georg, Lau, Susanne, Nöthen, Markus M., Hübner, Norbert, Imboden, Medea, Visconti, Alessia, Falchi, Mario, Bataille, Veronique, Hysi, Pirro, Ballardini, Natalia, Boomsma, Dorret I., Hottenga, Jouke J., Müller-Nurasyid, Martina, Ahluwalia, Tarunveer S., Stokholm, Jakob, Chawes, Bo, Schoos, Ann-Marie M., Esplugues, Ana, Bustamante, Mariona, Raby, Benjamin, Arshad, Syed, German, Chris, Esko, Tõnu, Milani, Lili A., Metspalu, Andres, Terao, Chikashi, Abuabara, Katrina, Løset, Mari, Hveem, Kristian, Jacobsson, Bo, Pino-Yanes, Maria, Strachan, David P., Grarup, Niels, Linneberg, Allan, Lee, Young-Ae, Probst-Hensch, Nicole, Weidinger, Stephan, Jarvelin, Marjo-Riitta, Melén, Erik, Hakonarson, Hakon, Irvine, Alan D., Jarvis, Deborah, Nijsten, Tamar, Duijts, Liesbeth, Vonk, Judith M., Koppelmann, Gerard H., Godfrey, Keith M., Barton, Sheila J., Feenstra, Bjarke, Pennell, Craig E., Sly, Peter D., Holt, Patrick G., Williams, L. Keoki, Bisgaard, Hans, Bønnelykke, Klaus, Curtin, John, Simpson, Angela, Murray, Clare, Schikowski, Tamara, Bunyavanich, Supinda, Weiss, Scott T., Holloway, John W., Min, Josine L., Brown, Sara J., Standl, Marie, Paternoster, Lavinia
Publicado 2023

Genetic diversity fuels gene discovery for tobacco and alcohol use

por Saunders, Gretchen R. B., Wang, Xingyan, Chen, Fang, Jang, Seon-Kyeong, Liu, Mengzhen, Wang, Chen, Gao, Shuang, Jiang, Yu, Khunsriraksakul, Chachrit, Otto, Jacqueline M., Addison, Clifton, Akiyama, Masato, Albert, Christine M., Aliev, Fazil, Alonso, Alvaro, Arnett, Donna K., Ashley-Koch, Allison E., Ashrani, Aneel A., Barnes, Kathleen C., Barr, R. Graham, Bartz, Traci M., Becker, Diane M., Bielak, Lawrence F., Benjamin, Emelia J., Bis, Joshua C., Bjornsdottir, Gyda, Blangero, John, Bleecker, Eugene R., Boardman, Jason D., Boerwinkle, Eric, Boomsma, Dorret I., Boorgula, Meher Preethi, Bowden, Donald W., Brody, Jennifer A., Cade, Brian E., Chasman, Daniel I., Chavan, Sameer, Chen, Yii-Der Ida, Chen, Zhengming, Cheng, Iona, Cho, Michael H., Choquet, Hélène, Cole, John W., Cornelis, Marilyn C., Cucca, Francesco, Curran, Joanne E., de Andrade, Mariza, Dick, Danielle M., Docherty, Anna R., Duggirala, Ravindranath, Eaton, Charles B., Ehringer, Marissa A., Esko, Tõnu, Faul, Jessica D., Fernandes Silva, Lilian, Fiorillo, Edoardo, Fornage, Myriam, Freedman, Barry I., Gabrielsen, Maiken E., Garrett, Melanie E., Gharib, Sina A., Gieger, Christian, Gillespie, Nathan, Glahn, David C., Gordon, Scott D., Gu, Charles C., Gu, Dongfeng, Gudbjartsson, Daniel F., Guo, Xiuqing, Haessler, Jeffrey, Hall, Michael E., Haller, Toomas, Harris, Kathleen Mullan, He, Jiang, Herd, Pamela, Hewitt, John K., Hickie, Ian, Hidalgo, Bertha, Hokanson, John E., Hopfer, Christian, Hottenga, JoukeJan, Hou, Lifang, Huang, Hongyan, Hung, Yi-Jen, Hunter, David J., Hveem, Kristian, Hwang, Shih-Jen, Hwu, Chii-Min, Iacono, William, Irvin, Marguerite R., Jee, Yon Ho, Johnson, Eric O., Joo, Yoonjung Y., Jorgenson, Eric, Justice, Anne E., Kamatani, Yoichiro, Kaplan, Robert C., Kaprio, Jaakko, Kardia, Sharon L. R., Keller, Matthew C., Kelly, Tanika N., Kooperberg, Charles, Korhonen, Tellervo, Kraft, Peter, Krauter, Kenneth, Kuusisto, Johanna, Laakso, Markku, Lasky-Su, Jessica, Lee, Wen-Jane, Lee, James J., Levy, Daniel, Li, Liming, Li, Kevin, Li, Yuqing, Lin, Kuang, Lind, Penelope A., Liu, Chunyu, Lloyd-Jones, Donald M., Lutz, Sharon M., Ma, Jiantao, Mägi, Reedik, Manichaikul, Ani, Martin, Nicholas G., Mathur, Ravi, Matoba, Nana, McArdle, Patrick F., McGue, Matt, McQueen, Matthew B., Medland, Sarah E., Metspalu, Andres, Meyers, Deborah A., Millwood, Iona Y., Mitchell, Braxton D., Mohlke, Karen L., Moll, Matthew, Montasser, May E., Morrison, Alanna C., Mulas, Antonella, Nielsen, Jonas B., North, Kari E., Oelsner, Elizabeth C., Okada, Yukinori, Orrù, Valeria, Palmer, Nicholette D., Palviainen, Teemu, Pandit, Anita, Park, S. Lani, Peters, Ulrike, Peters, Annette, Peyser, Patricia A., Polderman, Tinca J. C., Rafaels, Nicholas, Redline, Susan, Reed, Robert M., Reiner, Alex P., Rice, John P., Rich, Stephen S., Richmond, Nicole E., Roan, Carol, Rotter, Jerome I., Rueschman, Michael N., Runarsdottir, Valgerdur, Saccone, Nancy L., Schwartz, David A., Shadyab, Aladdin H., Shi, Jingchunzi, Shringarpure, Suyash S., Sicinski, Kamil, Skogholt, Anne Heidi, Smith, Jennifer A., Smith, Nicholas L., Sotoodehnia, Nona, Stallings, Michael C., Stefansson, Hreinn, Stefansson, Kari, Stitzel, Jerry A., Sun, Xiao, Syed, Moin, Tal-Singer, Ruth, Taylor, Amy E., Taylor, Kent D., Telen, Marilyn J., Thai, Khanh K., Tiwari, Hemant, Turman, Constance, Tyrfingsson, Thorarinn, Wall, Tamara L., Walters, Robin G., Weir, David R., Weiss, Scott T., White, Wendy B., Whitfield, John B., Wiggins, Kerri L., Willemsen, Gonneke, Willer, Cristen J., Winsvold, Bendik S., Xu, Huichun, Yanek, Lisa R., Yin, Jie, Young, Kristin L., Young, Kendra A., Yu, Bing, Zhao, Wei, Zhou, Wei, Zöllner, Sebastian, Zuccolo, Luisa, Batini, Chiara, Bergen, Andrew W., Bierut, Laura J., David, Sean P., Gagliano Taliun, Sarah A., Hancock, Dana B., Jiang, Bibo, Munafò, Marcus R., Thorgeirsson, Thorgeir E., Liu, Dajiang J., Vrieze, Scott
Publicado 2022