Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition

por Lee, Jover, Hadfield, James, Black, Allison, Sibley, Thomas R., Neher, Richard A., Bedford, Trevor, Huddleston, John
Publicado 2023

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

por Huddleston, John, Hadfield, James, Sibley, Thomas R., Lee, Jover, Fay, Kairsten, Ilcisin, Misja, Harkins, Elias, Bedford, Trevor, Neher, Richard A., Hodcroft, Emma B.
Publicado 2021

Patterns and rates of viral evolution in HIV-1 subtype B infected females and males

por Dapp, Michael J., Kober, Kord M., Chen, Lennie, Westfall, Dylan H., Wong, Kim, Zhao, Hong, Hall, Breana M., Deng, Wenjie, Sibley, Thomas, Ghorai, Suvankar, Kim, Katie, Chen, Natalie, McHugh, Sarah, Au, Lily, Cohen, Mardge, Anastos, Kathryn, Mullins, James I.
Publicado 2017

Effects of weather-related social distancing on city-scale transmission of respiratory viruses: a retrospective cohort study

por Jackson, Michael L., Hart, Gregory R., McCulloch, Denise J., Adler, Amanda, Brandstetter, Elisabeth, Fay, Kairsten, Han, Peter, Lacombe, Kirsten, Lee, Jover, Sibley, Thomas R., Nickerson, Deborah A., Rieder, Mark J., Starita, Lea, Englund, Janet A., Bedford, Trevor, Chu, Helen, Famulare, Michael
Publicado 2021

Streptococcus pneumoniae nasal carriage patterns with and without common respiratory virus detections in households in Seattle, WA, USA before and during the COVID-19 pandemic

por Bennett, Julia C., Emanuels, Anne, Heimonen, Jessica, O'Hanlon, Jessica, Hughes, James P., Han, Peter D., Chow, Eric J., Ogokeh, Constance E., Rolfes, Melissa A., Lockwood, Christine M., Pfau, Brian, Uyeki, Timothy M., Shendure, Jay, Hoag, Samara, Fay, Kairsten, Lee, Jover, Sibley, Thomas R., Rogers, Julia H., Starita, Lea M., Englund, Janet A., Chu, Helen Y.
Publicado 2023

The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology

por Chu, Helen Y, Boeckh, Michael, Englund, Janet A, Famulare, Michael, Lutz, Barry, Nickerson, Deborah A, Rieder, Mark, Starita, Lea M, Adler, Amanda, Brandstetter, Elisabeth, Frazer, Chris D, Han, Peter D, Gulati, Reena K, Hadfield, James, Jackson, Michael, Kiavand, Anahita, Kimball, Louise E, Lacombe, Kirsten, Newman, Kira, Sibley, Thomas R, Logue, Jennifer K, Lyon, Victoria Rachel, Wolf, Caitlin R, Zigman Suchsland, Monica, Shendure, Jay, Bedford, Trevor
Publicado 2020

Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study

por Kim, Ashley E., Brandstetter, Elisabeth, Wilcox, Naomi, Heimonen, Jessica, Graham, Chelsey, Han, Peter D., Starita, Lea M., McCulloch, Denise J., Casto, Amanda M., Nickerson, Deborah A., Van de Loo, Margaret M., Mooney, Jennifer, Ilcisin, Misja, Fay, Kairsten A., Lee, Jover, Sibley, Thomas R., Lyon, Victoria, Geyer, Rachel E., Thompson, Matthew, Lutz, Barry R., Rieder, Mark J., Bedford, Trevor, Boeckh, Michael, Englund, Janet A., Chu, Helen Y.
Publicado 2021

Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform

por Chu, Helen Y., Englund, Janet A., Starita, Lea M., Famulare, Michael, Brandstetter, Elisabeth, Nickerson, Deborah A., Rieder, Mark J., Adler, Amanda, Lacombe, Kirsten, Kim, Ashley E., Graham, Chelsey, Logue, Jennifer, Wolf, Caitlin R., Heimonen, Jessica, McCulloch, Denise J., Han, Peter D., Sibley, Thomas R., Lee, Jover, Ilcisin, Misja, Fay, Kairsten, Burstein, Roy, Martin, Beth, Lockwood, Christina M., Thompson, Matthew, Lutz, Barry, Jackson, Michael, Hughes, James P., Boeckh, Michael, Shendure, Jay, Bedford, Trevor
Publicado 2020

Trends in Risk Factors and Symptoms Associated With SARS-CoV-2 and Rhinovirus Test Positivity in King County, Washington, June 2020 to July 2022

por Hansen, Chelsea, Perofsky, Amanda C., Burstein, Roy, Famulare, Michael, Boyle, Shanda, Prentice, Robin, Marshall, Cooper, McCormick, Benjamin J. J., Reinhart, David, Capodanno, Ben, Truong, Melissa, Schwabe-Fry, Kristen, Kuchta, Kayla, Pfau, Brian, Acker, Zack, Lee, Jover, Sibley, Thomas R., McDermot, Evan, Rodriguez-Salas, Leslie, Stone, Jeremy, Gamboa, Luis, Han, Peter D., Duchin, Jeffery S., Waghmare, Alpana, Englund, Janet A., Shendure, Jay, Bedford, Trevor, Chu, Helen Y., Starita, Lea M., Viboud, Cécile
Publicado 2022

Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data

por Burstein, Roy, Althouse, Benjamin M., Adler, Amanda, Akullian, Adam, Brandstetter, Elizabeth, Cho, Shari, Emanuels, Anne, Fay, Kairsten, Gamboa, Luis, Han, Peter, Huden, Kristen, Ilcisin, Misja, Izzo, Mandy, Jackson, Michael L., Kim, Ashley E., Kimball, Louise, Lacombe, Kirsten, Lee, Jover, Logue, Jennifer K., Rogers, Julia, Chung, Erin, Sibley, Thomas R., Van Raay, Katrina, Wenger, Edward, Wolf, Caitlin R., Boeckh, Michael, Chu, Helen, Duchin, Jeff, Rieder, Mark, Shendure, Jay, Starita, Lea M., Viboud, Cecile, Bedford, Trevor, Englund, Janet A., Famulare, Michael
Publicado 2022

SARS-CoV-2 Epidemiology on a Public University Campus in Washington State

por Weil, Ana A, Sohlberg, Sarah L, O’Hanlon, Jessica A, Casto, Amanda M, Emanuels, Anne W, Lo, Natalie K, Greismer, Emily P, Magedson, Ariana M, Wilcox, Naomi C, Kim, Ashley E, Back, Lewis, Frazar, Christian D, Pelle, Ben, Sibley, Thomas R, Ilcisin, Misja, Lee, Jover, Ryke, Erica L, Craft, J Chris, Schwabe-Fry, Kristen M, Fay, Kairsten A, Cho, Shari, Han, Peter D, Heidl, Sarah J, Pfau, Brian A, Truong, Melissa, Zhong, Weizhi, Srivatsan, Sanjay R, Harb, Katia F, Gottlieb, Geoffrey S, Hughes, James P, Nickerson, Deborah A, Lockwood, Christina M, Starita, Lea M, Bedford, Trevor, Shendure, Jay A, Chu, Helen Y
Publicado 2021

LB21. The Seattle Flu Study: A Community-Based Study of Influenza

por Chu, Helen Y, Chu, Helen Y, Boeckh, Michael, Boeckh, Michael, Englund, Janet A, Englund, Janet A, Famulare, Michael, Lutz, Barry R, Lutz, Barry R, Nickerson, Deborah A, Rieder, Mark, Rieder, Mark, Starita, Lea, Starita, Lea, Thompson, Matthew, Thompson, Matthew, Shendure, Jay, Bedford, Trevor, Adler, Amanda, Brandstetter, Elisabeth, Brandstetter, Elisabeth, Bosua, Jeris, Bosua, Jeris, Frazar, Christian D, Han, Peter D, Gulati, Reena, Hadfield, James, Huang, ShiChu, Jackson, Michael L, Jackson, Michael L, Kiavand, Anahita, Kimball, Louise E, Kimball, Louise E, Lacombe, Kirsten, Lacombe, Kirsten, Logue, Jennifer, Logue, Jennifer, Lyon, Victoria, Sibley, Thomas R, Zigman Suchsland, Monica L, Zigman Suchsland, Monica L, Wolf, Caitlin R, Wolf, Caitlin R
Publicado 2019

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

por Müller, Nicola F., Wagner, Cassia, Frazar, Chris D., Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H., Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M., Lieberman, Nicole A. P., Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D., Fay, Kairsten, llcisin, Misja, Lacombe, Kristen, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Boeckh, Michael, Englund, Janet A., Famulare, Michael, Lutz, Barry R., Rieder, Mark J., Thompson, Matthew, Duchin, Jeffrey S., Starita, Lea M., Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Lindquist, Scott, Greninger, Alexander L., Nickerson, Deborah A., Bedford, Trevor
Publicado 2020

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

por Müller, Nicola F., Wagner, Cassia, Frazar, Chris D., Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H., Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, Shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M., Lieberman, Nicole A. P., Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D., Fay, Kairsten, Ilcisin, Misja, Lacombe, Kirsten, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Boeckh, Michael, Englund, Janet A., Famulare, Michael, Lutz, Barry R., Rieder, Mark J., Thompson, Matthew, Duchin, Jeffrey S., Starita, Lea M., Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Lindquist, Scott, Greninger, Alexander L., Nickerson, Deborah A., Bedford, Trevor
Publicado 2021

Cryptic transmission of SARS-CoV-2 in Washington State

por Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D., Fay, Kairsten, Frazar, Chris D., Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Nickerson, Deborah A., Rieder, Mark J., Englund, Janet A., Hadfield, James, Hodcroft, Emma B., Huddleston, John, Moncla, Louise H., Müller, Nicola F., Neher, Richard A., Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeff, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L., Baird, Geoffrey S., Chu, Helen Y., Shendure, Jay, Jerome, Keith R.
Publicado 2020

Cryptic transmission of SARS-CoV-2 in Washington state

por Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N., Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D., Fay, Kairsten, Frazar, Chris D., Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Nickerson, Deborah A., Rieder, Mark J., Englund, Janet A., Hadfield, James, Hodcroft, Emma B., Huddleston, John, Moncla, Louise H., Müller, Nicola F., Neher, Richard A., Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeffrey S., Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L., Baird, Geoffrey S., Chu, Helen Y., Shendure, Jay, Jerome, Keith R.
Publicado 2020