Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

por Al-Nakeeb, Kosai, Petersen, Thomas Nordahl, Sicheritz-Pontén, Thomas
Publicado 2017

Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, Ind...

por Chatterjee, Anirvan, Sicheritz-Pontén, Thomas, Yadav, Rajesh, Kondabagil, Kiran
Publicado 2019

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

por Zepeda Mendoza, Marie Lisandra, Sicheritz-Pontén, Thomas, Gilbert, M. Thomas P.
Publicado 2015

Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes

por Alsmark, Cecilia, Foster, Peter G, Sicheritz-Ponten, Thomas, Nakjang, Sirintra, Martin Embley, T, Hirt, Robert P
Publicado 2013

Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry

por Thrane, Ulf, Rasmussen, Kasper Bøwig, Petersen, Bent, Rasmussen, Simon, Sicheritz-Pontén, Thomas, Mortensen, Uffe Hasbro
Publicado 2017

Microbiota in foods from Inuit traditional hunting

por Hauptmann, Aviaja L., Paulová, Petronela, Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, Gert, Nielsen, Dennis S.
Publicado 2020

Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

por Haddad, Nizar Jamal, Al-Nakeeb, Kosai, Petersen, Bent, Dalén, Love, Blom, Nikolaj, Sicheritz-Pontén, Thomas
Publicado 2017

The chemical interactome space between the human host and the genetically defined gut metabotypes

por Jacobsen, Ulrik Plesner, Nielsen, Henrik Bjørn, Hildebrand, Falk, Raes, Jeroen, Sicheritz-Ponten, Thomas, Kouskoumvekaki, Irene, Panagiotou, Gianni
Publicado 2013

Rapid discovery of novel prophages using biological feature engineering and machine learning

por Sirén, Kimmo, Millard, Andrew, Petersen, Bent, Gilbert, M Thomas P, Clokie, Martha R J, Sicheritz-Pontén, Thomas
Publicado 2021

Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

por Wesolowska-Andersen, Agata, Bahl, Martin Iain, Carvalho, Vera, Kristiansen, Karsten, Sicheritz-Pontén, Thomas, Gupta, Ramneek, Licht, Tine Rask
Publicado 2014

Transcriptome and Genome Size Analysis of the Venus Flytrap

por Jensen, Michael Krogh, Vogt, Josef Korbinian, Bressendorff, Simon, Seguin-Orlando, Andaine, Petersen, Morten, Sicheritz-Pontén, Thomas, Mundy, John
Publicado 2015

Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae)

por Haddad, Nizar, Adjlane, Noureddine, Loucif-Ayad, Wahida, Dash, Abhinandita, S., Naganeeswaran, Rajashekar, Balaji, Al-Nakeeb, Kosai, Sicheritz-Ponten, Thomas
Publicado 2017

Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary

por Hauptmann, Aviaja L., Markussen, Thor N., Stibal, Marek, Olsen, Nikoline S., Elberling, Bo, Bælum, Jacob, Sicheritz-Pontén, Thomas, Jacobsen, Carsten S.
Publicado 2016

Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome

por Jensen, Lars Juhl, Skovgaard, Marie, Sicheritz-Pontén, Thomas, Jørgensen, Merete Kjær, Lundegaard, Christiane, Pedersen, Corinna Cavan, Petersen, Nanna, Ussery, David
Publicado 2003

Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics

por Noël, Christophe J, Diaz, Nicia, Sicheritz-Ponten, Thomas, Safarikova, Lucie, Tachezy, Jan, Tang, Petrus, Fiori, Pier-Luigi, Hirt, Robert P
Publicado 2010

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins

por Diella, Francesca, Cameron, Scott, Gemünd, Christine, Linding, Rune, Via, Allegra, Kuster, Bernhard, Sicheritz-Pontén, Thomas, Blom, Nikolaj, Gibson, Toby J
Publicado 2004

Reads2Type: a web application for rapid microbial taxonomy identification

por Saputra, Dhany, Rasmussen, Simon, Larsen, Mette V., Haddad, Nizar, Sperotto, Maria Maddalena, Aarestrup, Frank M., Lund, Ole, Sicheritz-Pontén, Thomas
Publicado 2015

A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

por Marcatili, Paolo, Nielsen, Martin W., Sicheritz-Pontén, Thomas, Jensen, Tim K., Schafer-Nielsen, Claus, Boye, Mette, Nielsen, Morten, Klitgaard, Kirstine
Publicado 2016

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

por Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas
Publicado 2017

Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

por Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas
Publicado 2017