Population variation in miRNAs and isomiRs and their impact on human immunity to infection

por Rotival, Maxime, Siddle, Katherine J., Silvert, Martin, Pothlichet, Julien, Quach, Hélène, Quintana-Murci, Lluis
Publicado 2020

985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance

por Messer, Katelyn S, Adams, Gordon, Paull, Jillian S, Livny, Jonathan, Lemieux, Jacob, Park, Daniel J, Sabeti, Pardis C, Siddle, Katherine J
Publicado 2023

Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs

por Siddle, Katherine J., Tailleux, Ludovic, Deschamps, Matthieu, Loh, Yong-Hwee Eddie, Deluen, Cécile, Gicquel, Brigitte, Antoniewski, Christophe, Barreiro, Luis B., Farinelli, Laurent, Quintana-Murci, Lluís
Publicado 2015

A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection

por Siddle, Katherine J., Deschamps, Matthieu, Tailleux, Ludovic, Nédélec, Yohann, Pothlichet, Julien, Lugo-Villarino, Geanncarlo, Libri, Valentina, Gicquel, Brigitte, Neyrolles, Olivier, Laval, Guillaume, Patin, Etienne, Barreiro, Luis B., Quintana-Murci, Lluís
Publicado 2014

miR-222 isoforms are differentially regulated by type-I interferon

por Nejad, Charlotte, Pillman, Katherine A., Siddle, Katherine J., Pépin, Geneviève, Änkö, Minna-Liisa, McCoy, Claire E., Beilharz, Traude H., Quintana-Murci, Lluís, Goodall, Gregory J., Bracken, Cameron P., Gantier, Michael P.
Publicado 2018

High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection

por Normandin, Erica, Rudy, Melissa, Barkas, Nikolaos, Schaffner, Stephen F., Levine, Zoe, Padera, Robert F., Babadi, Mehrtash, Mukerji, Shibani S., Park, Daniel J., MacInnis, Bronwyn L., Siddle, Katherine J., Sabeti, Pardis C., Solomon, Isaac H.
Publicado 2023

Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques

por Santus, Luisa, Sopena-Rios, Maria, García-Pérez, Raquel, Lin, Aaron E., Adams, Gordon C., Barnes, Kayla G., Siddle, Katherine J., Wohl, Shirlee, Reverter, Ferran, Rinn, John L., Bennett, Richard S., Hensley, Lisa E., Sabeti, Pardis C., Melé, Marta
Publicado 2023

Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection

por Pai, Athma A., Baharian, Golshid, Pagé Sabourin, Ariane, Brinkworth, Jessica F., Nédélec, Yohann, Foley, Joseph W., Grenier, Jean-Christophe, Siddle, Katherine J., Dumaine, Anne, Yotova, Vania, Johnson, Zachary P., Lanford, Robert E., Burge, Christopher B., Barreiro, Luis B.
Publicado 2016

Molecular epidemiology of Plasmodium falciparum by multiplexed amplicon deep sequencing in Senegal

por Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Siddle, Katherine J., Park, Daniel J., Bei, Amy K., Deme, Awa B., Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye Die, Ndiaye, Ibrahima Mbaye, Diallo, Mamadou Alpha, Diongue, Khadim, Volkman, Sarah K., Badiane, Aida Sadikh, Ndiaye, Daouda
Publicado 2020

Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018

por Gaye, Amy, Ndiaye, Tolla, Sy, Mouhamad, Deme, Awa B., Thiaw, Alphonse B., Sene, Aita, Ndiaye, Cheikh, Diedhiou, Younouss, Mbaye, Amadou M., Ndiaye, Ibrahima, Tomkins-Tinch, Christopher, Gomis, Jules F., Badiane, Aida S., MacInnis, Bronwyn, Park, Daniel J., Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C., Siddle, Katherine J., Ndiaye, Daouda
Publicado 2021

The epigenomic landscape of African rainforest hunter-gatherers and farmers

por Fagny, Maud, Patin, Etienne, MacIsaac, Julia L., Rotival, Maxime, Flutre, Timothée, Jones, Meaghan J., Siddle, Katherine J., Quach, Hélène, Harmant, Christine, McEwen, Lisa M., Froment, Alain, Heyer, Evelyne, Gessain, Antoine, Betsem, Edouard, Mouguiama-Daouda, Patrick, Hombert, Jean-Marie, Perry, George H., Barreiro, Luis B., Kobor, Michael S., Quintana-Murci, Lluis
Publicado 2015

Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal

por Gaye, Amy, Sy, Mouhamad, Ndiaye, Tolla, Siddle, Katherine J., Park, Daniel J., Deme, Awa B., Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye Die, Neafsey, Daniel E., Early, Angela, Farrell, Timothy, Yade, Mamadou Samb, Diallo, Mamadou Alpha, Diongue, Khadim, Bei, Amy, Ndiaye, Ibrahima Mbaye, Volkman, Sarah K., Badiane, Aida Sadikh, Ndiaye, Daouda
Publicado 2020

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

por Normandin, Erica, Holroyd, Kathryn B., Collens, Sarah I., Shaw, Bennett M., Siddle, Katherine J., Adams, Gordon, Rudy, Melissa, Solomon, Isaac H., Anahtar, Melis N., Lemieux, Jacob E., Trombetta, Bianca A., Kivisakk, Pia, Arnold, Steven E., Rapalino, Otto, Piantadosi, Anne L., Sen, Pritha, Rosenberg, Eric S., Branda, John, Sabeti, Pardis C., Mukerji, Shibani S.
Publicado 2021

The 2022 RSV surge was driven by multiple viral lineages

por Adams, Gordon, Moreno, Gage K., Petros, Brittany A., Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn, Dobbins, Sabrina T., DeRuff, Katherine C., Loreth, Christine, Brock-Fisher, Taylor, Schaffner, Stephen F., Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel, Turbett, Sarah, Siddle, Katherine J., MacInnis, Bronwyn L., Sabeti, Pardis, Lemieux, Jacob
Publicado 2023

Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria

por Levine, Zoë C., Sene, Aita, Mkandawire, Winnie, Deme, Awa B., Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Diedhiou, Younouss, Mbaye, Amadou M., Ndiaye, Ibrahima, Gomis, Jules, Ndiop, Médoune, Sene, Doudou, Paye, Marietou Faye, MacInnis, Bronwyn, Schaffner, Stephen F., Park, Daniel J., Badiane, Aida S., Colubri, Andres, Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C., Ndiaye, Daouda, Siddle, Katherine J.
Publicado 2023

Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

por Ajogbasile, Fehintola V., Oguzie, Judith U., Oluniyi, Paul E., Eromon, Philomena E., Uwanibe, Jessica N., Mehta, Samar B., Siddle, Katherine J., Odia, Ikponmwosa, Winnicki, Sarah M., Akpede, Nosa, Akpede, George, Okogbenin, Sylvanus, Ogbaini-Emovon, Ephraim, MacInnis, Bronwyn L., Folarin, Onikepe A., Modjarrad, Kayvon, Schaffner, Stephen F., Tomori, Oyewale, Ihekweazu, Chikwe, Sabeti, Pardis C., Happi, Christian T.
Publicado 2020

Genomic investigation of atypical malaria cases in Kanel, northern Senegal

por Sy, Mouhamad, Badiane, Aida Sadikh, Deme, Awa Bineta, Gaye, Amy, Ndiaye, Tolla, Fall, Fatou Ba, Siddle, Katherine J., Dieye, Baba, Ndiaye, Yaye Die, Diallo, Mamadou Alpha, Diongue, Khadim, Seck, Mame Cheikh, Ndiaye, Ibrahima Mbaye, Cissé, Moustapha, Gueye, Alioune Badara, Sène, Doudou, Dieye, Yakou, Souané, Tamba, MacInnis, Bronwyn, Volkman, Sarah K., Wirth, Dyann F., Ndiaye, Daouda
Publicado 2021

Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings — Barnstable County, Massachusetts, July 2021

por Brown, Catherine M., Vostok, Johanna, Johnson, Hillary, Burns, Meagan, Gharpure, Radhika, Sami, Samira, Sabo, Rebecca T., Hall, Noemi, Foreman, Anne, Schubert, Petra L., Gallagher, Glen R., Fink, Timelia, Madoff, Lawrence C., Gabriel, Stacey B., MacInnis, Bronwyn, Park, Daniel J., Siddle, Katherine J., Harik, Vaira, Arvidson, Deirdre, Brock-Fisher, Taylor, Dunn, Molly, Kearns, Amanda, Laney, A. Scott
Publicado 2021

Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study

por Turbett, Sarah E, Tomkins-Tinch, Christopher H, Anahtar, Melis N, Dugdale, Caitlin M, Hyle, Emily P, Shenoy, Erica S, Shaw, Bennett, Egbuonu, Kenechukwu, Bowman, Kathryn A, Zachary, Kimon C, Adams, Gordon C, Hooper, David C, Ryan, Edward T, LaRocque, Regina C, Bassett, Ingrid V, Triant, Virginia A, Siddle, Katherine J, Rosenberg, Eric, Sabeti, Pardis C, Schaffner, Stephen F, MacInnis, Bronwyn L, Lemieux, Jacob E, Charles, Richelle C
Publicado 2022