Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12

por Wu, Peter I-Fan, Ross, Curtis, Siegele, Deborah A, Hu, James C
Publicado 2020

GONUTS: the Gene Ontology Normal Usage Tracking System

por Renfro, Daniel P., McIntosh, Brenley K., Venkatraman, Anand, Siegele, Deborah A., Hu, James C.
Publicado 2012

Heterogeneous Distribution of Proton Motive Force in Nonheritable Antibiotic Resistance

por Lee, Annie H., Gupta, Rachit, Nguyen, Hong Nhi, Schmitz, Isabella R., Siegele, Deborah A., Lele, Pushkar P.
Publicado 2023

Heat Shock Transcription Factor σ(32) Co-opts the Signal Recognition Particle to Regulate Protein Homeostasis in E. coli

por Lim, Bentley, Miyazaki, Ryoji, Neher, Saskia, Siegele, Deborah A., Ito, Koreaki, Walter, Peter, Akiyama, Yoshinori, Yura, Takashi, Gross, Carol A.
Publicado 2013

Phenotype annotation with the ontology of microbial phenotypes (OMP)

por Siegele, Deborah A., LaBonte, Sandra A., Wu, Peter I-Fan, Chibucos, Marcus C., Nandendla, Suvarna, Giglio, Michelle G., Hu, James C.
Publicado 2019

An ontology for microbial phenotypes

por Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G
Publicado 2014

EcoliWiki: a wiki-based community resource for Escherichia coli

por McIntosh, Brenley K., Renfro, Daniel P., Knapp, Gwendowlyn S., Lairikyengbam, Chanchala R., Liles, Nathan M., Niu, Lili, Supak, Amanda M., Venkatraman, Anand, Zweifel, Adrienne E., Siegele, Deborah A., Hu, James C.
Publicado 2012

A tool-kit for high-throughput, quantitative analyses of genetic interactions in E. coli

por Typas, Athanasios, Nichols, Robert J., Siegele, Deborah A., Shales, Michael, Collins, Sean, Lim, Bentley, Braberg, Hannes, Yamamoto, Natsuko, Takeuchi, Rikiya, Wanner, Barry L., Mori, Hirotada, Weissman, Jonathan S., Krogan, Nevan J., Gross, Carol A.
Publicado 2008

ECO, the Evidence & Conclusion Ontology: community standard for evidence information

por Giglio, Michelle, Tauber, Rebecca, Nadendla, Suvarna, Munro, James, Olley, Dustin, Ball, Shoshannah, Mitraka, Elvira, Schriml, Lynn M, Gaudet, Pascale, Hobbs, Elizabeth T, Erill, Ivan, Siegele, Deborah A, Hu, James C, Mungall, Chris, Chibucos, Marcus C
Publicado 2019

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools

por Hu, James C., Sherlock, Gavin, Siegele, Deborah A., Aleksander, Suzanne A., Ball, Catherine A., Demeter, Janos, Gouni, Sushanth, Holland, Timothy A., Karp, Peter D., Lewis, John E., Liles, Nathan M., McIntosh, Brenley K., Mi, Huaiyu, Muruganujan, Anushya, Wymore, Farrell, Thomas, Paul D.
Publicado 2014

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

por Ramsey, Jolene, McIntosh, Brenley, Renfro, Daniel, Aleksander, Suzanne A., LaBonte, Sandra, Ross, Curtis, Zweifel, Adrienne E., Liles, Nathan, Farrar, Shabnam, Gill, Jason J., Erill, Ivan, Ades, Sarah, Berardini, Tanya Z., Bennett, Jennifer A., Brady, Siobhan, Britton, Robert, Carbon, Seth, Caruso, Steven M., Clements, Dave, Dalia, Ritu, Defelice, Meredith, Doyle, Erin L., Friedberg, Iddo, Gurney, Susan M. R., Hughes, Lee, Johnson, Allison, Kowalski, Jason M., Li, Donghui, Lovering, Ruth C., Mans, Tamara L., McCarthy, Fiona, Moore, Sean D., Murphy, Rebecca, Paustian, Timothy D., Perdue, Sarah, Peterson, Celeste N., Prüß, Birgit M., Saha, Margaret S., Sheehy, Robert R., Tansey, John T., Temple, Louise, Thorman, Alexander William, Trevino, Saul, Vollmer, Amy Cheng, Walbot, Virginia, Willey, Joanne, Siegele, Deborah A., Hu, James C.
Publicado 2021

The Gene Ontology knowledgebase in 2023

por Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Feuermann, Marc, Gaudet, Pascale, Harris, Nomi L, Hill, David P, Lee, Raymond, Mi, Huaiyu, Moxon, Sierra, Mungall, Christopher J, Muruganugan, Anushya, Mushayahama, Tremayne, Sternberg, Paul W, Thomas, Paul D, Van Auken, Kimberly, Ramsey, Jolene, Siegele, Deborah A, Chisholm, Rex L, Fey, Petra, Aspromonte, Maria Cristina, Nugnes, Maria Victoria, Quaglia, Federica, Tosatto, Silvio, Giglio, Michelle, Nadendla, Suvarna, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Marygold, Steven, Strelets, Victor, Tabone, Christopher J, Thurmond, Jim, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Luna Buitrago, Diana, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Long, Miao, Michalak, Aleksandra, Pesala, Angeline, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Christie, Karen, Corbani, Lori, Dolan, Mary E, Drabkin, Harold J, Hill, David P, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Cuzick, Alayne, Seager, James, Cooper, Laurel, Elser, Justin, Jaiswal, Pankaj, Gupta, Parul, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kaldunski, Mary L, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Aimo, Lucila, Axelsen, Kristian, Bridge, Alan, Hyka-Nouspikel, Nevila, Morgat, Anne, Aleksander, Suzi A, Cherry, J Michael, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Axelsen, Kristian, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Bridge, Alan, Casals-Casas, Cristina, Coudert, Elisabeth, Estreicher, Anne, Livia Famiglietti, Maria, Feuermann, Marc, Gos, Arnaud, Gruaz-Gumowski, Nadine, Hulo, Chantal, Hyka-Nouspikel, Nevila, Jungo, Florence, Le Mercier, Philippe, Lieberherr, Damien, Masson, Patrick, Morgat, Anne, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bateman, Alex, Bowler-Barnett, Emily, Bye-A-Jee, Hema, Denny, Paul, Ignatchenko, Alexandr, Ishtiaq, Rizwan, Lock, Antonia, Lussi, Yvonne, Magrane, Michele, Martin, Maria J, Orchard, Sandra, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Diamantakis, Stavros, Raciti, Daniela, Zarowiecki, Magdalena, Fisher, Malcolm, James-Zorn, Christina, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla, Westerfield, Monte
Publicado 2023