Extension of coarse-grained UNRES force field to treat carbon nanotubes

por Sieradzan, Adam K., Mozolewska, Magdalena A.
Publicado 2018

Mechanical Stability of Ribonuclease A Heavily Depends on the Redox Environment

por Smardz, Pamela, Sieradzan, Adam K., Krupa, Paweł
Publicado 2022

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics

por Czaplewski, Cezary, Karczyńska, Agnieszka, Sieradzan, Adam K, Liwo, Adam
Publicado 2018

Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to Heparin

por Danielsson, Annemarie, Samsonov, Sergey A., Liwo, Adam, Sieradzan, Adam K.
Publicado 2023

Revised Backbone-Virtual-Bond-Angle Potentials to Treat the l- and d-Amino Acid Residues in the Coarse-Grained United Residue (UNRES) Force Field

por Sieradzan, Adam K., Niadzvedtski, Andrei, Scheraga, Harold A., Liwo, Adam
Publicado 2014

Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches

por Lipska, Agnieszka G., Sieradzan, Adam K., Atmaca, Sümeyye, Czaplewski, Cezary, Liwo, Adam
Publicado 2023

Mitochondrial potassium channels: A novel calcitriol target

por Olszewska, Anna M., Sieradzan, Adam K., Bednarczyk, Piotr, Szewczyk, Adam, Żmijewski, Michał A.
Publicado 2022

Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems

por Liwo, Adam, Czaplewski, Cezary, Sieradzan, Adam K., Lipska, Agnieszka G., Samsonov, Sergey A., Murarka, Rajesh K.
Publicado 2021

Structural Characterization of Covalently Stabilized Human Cystatin C Oligomers

por Chrabąszczewska, Magdalena, Sieradzan, Adam K., Rodziewicz-Motowidło, Sylwia, Grubb, Anders, Dobson, Christopher M., Kumita, Janet R., Kozak, Maciej
Publicado 2020

UNRES-GPU for physics-based coarse-grained simulations of protein systems at biological time- and size-scales

por Ocetkiewicz, Krzysztof M, Czaplewski, Cezary, Krawczyk, Henryk, Lipska, Agnieszka G, Liwo, Adam, Proficz, Jerzy, Sieradzan, Adam K, Czarnul, Paweł
Publicado 2023

A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions

por Liwo, Adam, Baranowski, Maciej, Czaplewski, Cezary, Gołaś, Ewa, He, Yi, Jagieła, Dawid, Krupa, Paweł, Maciejczyk, Maciej, Makowski, Mariusz, Mozolewska, Magdalena A., Niadzvedtski, Andrei, Ołdziej, Stanisław, Scheraga, Harold A., Sieradzan, Adam K., Ślusarz, Rafał, Wirecki, Tomasz, Yin, Yanping, Zaborowski, Bartłomiej
Publicado 2014

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

por Karczyńska, Agnieszka S., Ziȩba, Karolina, Uciechowska, Urszula, Mozolewska, Magdalena A., Krupa, Paweł, Lubecka, Emilia A., Lipska, Agnieszka G., Sikorska, Celina, Samsonov, Sergey A., Sieradzan, Adam K., Giełdoń, Artur, Liwo, Adam, Ślusarz, Rafał, Ślusarz, Magdalena, Lee, Jooyoung, Joo, Keehyoung, Czaplewski, Cezary
Publicado 2020

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

por Keasar, Chen, McGuffin, Liam J., Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro Oliveira, Cao, Renzhi, Dhanasekaran, B. K., Dimas, Itzhel, Faccioli, Rodrigo Antonio, Faraggi, Eshel, Ganzynkowicz, Robert, Ghosh, Sambit, Ghosh, Soma, Giełdoń, Artur, Golon, Lukasz, He, Yi, Heo, Lim, Hou, Jie, Khan, Main, Khatib, Firas, Khoury, George A., Kieslich, Chris, Kim, David E., Krupa, Pawel, Lee, Gyu Rie, Li, Hongbo, Li, Jilong, Lipska, Agnieszka, Liwo, Adam, Maghrabi, Ali Hassan A., Mirdita, Milot, Mirzaei, Shokoufeh, Mozolewska, Magdalena A., Onel, Melis, Ovchinnikov, Sergey, Shah, Anand, Shah, Utkarsh, Sidi, Tomer, Sieradzan, Adam K., Ślusarz, Magdalena, Ślusarz, Rafal, Smadbeck, James, Tamamis, Phanourios, Trieber, Nicholas, Wirecki, Tomasz, Yin, Yanping, Zhang, Yang, Bacardit, Jaume, Baranowski, Maciej, Chapman, Nicholas, Cooper, Seth, Defelicibus, Alexandre, Flatten, Jeff, Koepnick, Brian, Popović, Zoran, Zaborowski, Bartlomiej, Baker, David, Cheng, Jianlin, Czaplewski, Cezary, Delbem, Alexandre Cláudio Botazzo, Floudas, Christodoulos, Kloczkowski, Andrzej, Ołdziej, Stanislaw, Levitt, Michael, Scheraga, Harold, Seok, Chaok, Söding, Johannes, Vishveshwara, Saraswathi, Xu, Dong, Crivelli, Silvia N.
Publicado 2018