Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States

por Silverman, Justin D., Hupert, Nathaniel, Washburne, Alex D.
Publicado 2020

Addressing erroneous scale assumptions in microbe and gene set enrichment analysis

por McGovern, Kyle C., Nixon, Michelle Pistner, Silverman, Justin D.
Publicado 2023

Naught all zeros in sequence count data are the same

por Silverman, Justin D., Roche, Kimberly, Mukherjee, Sayan, David, Lawrence A.
Publicado 2020

A phylogenetic transform enhances analysis of compositional microbiota data

por Silverman, Justin D, Washburne, Alex D, Mukherjee, Sayan, David, Lawrence A
Publicado 2017

Race, employment, and the pandemic: An exploration of covariate explanations of COVID-19 case fatality rate variance

por Griffin, Christopher, Block, Ray, Silverman, Justin D., Croad, Jason, Lennon, Robert P.
Publicado 2023

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

por Silverman, Justin D., Durand, Heather K., Bloom, Rachael J., Mukherjee, Sayan, David, Lawrence A.
Publicado 2018

Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

por Silverman, Justin D., Durand, Heather K., Bloom, Rachael J., Mukherjee, Sayan, David, Lawrence A.
Publicado 2018

Modeling the temporal dynamics of the gut microbial community in adults and infants

por Shenhav, Liat, Furman, Ori, Briscoe, Leah, Thompson, Mike, Silverman, Justin D., Mizrahi, Itzhak, Halperin, Eran
Publicado 2019

Metformin modulates the gut microbiome in broiler breeder hens

por Van Syoc, Emily, Weaver, Evelyn, Rogers, Connie J., Silverman, Justin D., Ramachandran, Ramesh, Ganda, Erika
Publicado 2022

Measuring and mitigating PCR bias in microbiota datasets

por Silverman, Justin D., Bloom, Rachael J., Jiang, Sharon, Durand, Heather K., Dallow, Eric, Mukherjee, Sayan, David, Lawrence A.
Publicado 2021

Decoding the olfactory map through targeted transcriptomics links murine olfactory receptors to glomeruli

por Zhu, Kevin W., Burton, Shawn D., Nagai, Maira H., Silverman, Justin D., de March, Claire A., Wachowiak, Matt, Matsunami, Hiroaki
Publicado 2022

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

por Washburne, Alex D., Silverman, Justin D., Leff, Jonathan W., Bennett, Dominic J., Darcy, John L., Mukherjee, Sayan, Fierer, Noah, David, Lawrence A.
Publicado 2017

DNA Extraction and Host Depletion Methods Significantly Impact and Potentially Bias Bacterial Detection in a Biological Fluid

por Ganda, Erika, Beck, Kristen L., Haiminen, Niina, Silverman, Justin D., Kawas, Ban, Cronk, Brittany D., Anderson, Renee R., Goodman, Laura B., Wiedmann, Martin
Publicado 2021

Changes in the Type 2 diabetes gut mycobiome associate with metformin treatment across populations

por Van Syoc, Emily, Nixon, Michelle Pistner, Silverman, Justin D., Luo, Yuhong, Gonzalez, Frank J., Elbere, Ilze, Klovins, Janis, Patterson, Andrew D., Rogers, Connie J., Ganda, Erika
Publicado 2023

Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture

por Villa, Max M., Bloom, Rachael J., Silverman, Justin D., Durand, Heather K., Jiang, Sharon, Wu, Anchi, Dallow, Eric P., Huang, Shuqiang, You, Lingchong, David, Lawrence A.
Publicado 2020

Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition

por Holmes, Zachary C., Silverman, Justin D., Dressman, Holly K., Wei, Zhengzheng, Dallow, Eric P., Armstrong, Sarah C., Seed, Patrick C., Rawls, John F., David, Lawrence A.
Publicado 2020

Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake

por Holmes, Zachary C., Villa, Max M., Durand, Heather K., Jiang, Sharon, Dallow, Eric P., Petrone, Brianna L., Silverman, Justin D., Lin, Pao-Hwa, David, Lawrence A.
Publicado 2022

Phosphorylation barcodes direct biased chemokine signaling at CXCR3

por Eiger, Dylan S., Smith, Jeffrey S., Shi, Tujin, Stepniewski, Tomasz Maciej, Tsai, Chia-Feng, Honeycutt, Christopher, Boldizsar, Noelia, Gardner, Julia, Nicora, Carrie D., Moghieb, Ahmed M., Kawakami, Kouki, Choi, Issac, Zheng, Kevin, Warman, Anmol, Alagesan, Priya, Knape, Nicole M., Huang, Ouwen, Silverman, Justin D., Smith, Richard D., Inoue, Asuka, Selent, Jana, Jacobs, Jon M., Rajagopal, Sudarshan
Publicado 2023

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

por Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James D., Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry L. M., van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
Publicado 2021