Low-Abundance HIV Drug-Resistant Viral Variants in Treatment-Experienced Persons Correlate with Historical Antiretroviral Use

por Le, Thuy, Chiarella, Jennifer, Simen, Birgitte B., Hanczaruk, Bozena, Egholm, Michael, Landry, Marie L., Dieckhaus, Kevin, Rosen, Marc I., Kozal, Michael J.
Publicado 2009

Virologic Failures on Initial Boosted-PI Regimen Infrequently Possess Low-Level Variants with Major PI Resistance Mutations by Ultra-Deep Sequencing

por Lataillade, Max, Chiarella, Jennifer, Yang, Rong, DeGrosky, Michelle, Uy, Jonathan, Seekins, Daniel, Simen, Birgitte, St. John, Elizabeth, Moreno, Elizabeth, Kozal, Michael
Publicado 2012

Low-Frequency NNRTI-Resistant HIV-1 Variants and Relationship to Mutational Load in Antiretroviral-Naïve Subjects

por Gupta, Shaili, Lataillade, Max, Kyriakides, Tassos C., Chiarella, Jennifer, St. John, Elizabeth P., Webb, Suzin, Moreno, Elizabeth A., Simen, Birgitte B., Kozal, Michael J.
Publicado 2014

Prevalence and Clinical Significance of HIV Drug Resistance Mutations by Ultra-Deep Sequencing in Antiretroviral-Naïve Subjects in the CASTLE Study

por Lataillade, Max, Chiarella, Jennifer, Yang, Rong, Schnittman, Steven, Wirtz, Victoria, Uy, Jonathan, Seekins, Daniel, Krystal, Mark, Mancini, Marco, McGrath, Donnie, Simen, Birgitte, Egholm, Michael, Kozal, Michael
Publicado 2010

Next Generation Sequencing Reveals the Association of DRB3*02:02 With Type 1 Diabetes

por Erlich, Henry A., Valdes, Ana Maria, McDevitt, Shana L., Simen, Birgitte B., Blake, Lisbeth A., McGowan, Kim R., Todd, John A., Rich, Stephen S., Noble, Janelle A.
Publicado 2013

Deep sequencing of HIV-1 variants from paired plasma and cerebrospinal fluid during primary HIV infection

por Gega, Arjet, Kozal, Michael J, Chiarella, Jennifer, Lee, Evelyn, Peterson, Julia, Hecht, Frederick M, Liegler, Teri, St John, Elizabeth P, Simen, Birgitte B, Price, Richard W, Spudich, Serena S
Publicado 2015

Notes from the Field: Early Identification of the SARS-CoV-2 Omicron BA.2.86 Variant by the Traveler-Based Genomic Surveillance Program — Dulles International Airport, August 2023...

por Bart, Stephen M., Rothstein, Andrew P., Philipson, Casandra W., Smith, Teresa C., Simen, Birgitte B., Tamin, Azaibi, Atherton, Lydia J., Harcourt, Jennifer L., Taylor Walker, Allison, Payne, Daniel C., Ernst, Ezra T., Morfino, Robert C., Ruskey, Ian, Friedman, Cindy R.
Publicado 2023

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

por St. John, Elizabeth P., Simen, Birgitte B., Turenchalk, Gregory S., Braverman, Michael S., Abbate, Isabella, Aerssens, Jeroen, Bouchez, Olivier, Gabriel, Christian, Izopet, Jacques, Meixenberger, Karolin, Di Giallonardo, Francesca, Schlapbach, Ralph, Paredes, Roger, Sakwa, James, Schmitz-Agheguian, Gudrun G., Thielen, Alexander, Victor, Martin, Metzner, Karin J., Däumer, Martin P.
Publicado 2016

Early Detection of Severe Acute Respiratory Syndrome Coronavirus 2 Variants Using Traveler-based Genomic Surveillance at 4 US Airports, September 2021–January 2022

por Wegrzyn, Renee D, Appiah, Grace D, Morfino, Robert, Milford, Scott R, Walker, Allison Taylor, Ernst, Ezra T, Darrow, William W, Li, Siyao Lisa, Robison, Keith, MacCannell, Duncan, Dai, Dongjuan, Girinathan, Brintha P, Hicks, Allison L, Cosca, Bryan, Woronoff, Gabrielle, Plocik, Alex M, Simen, Birgitte B, Moriarty, Leah, Guagliardo, Sarah Anne J, Cetron, Martin S, Friedman, Cindy R
Publicado 2022

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B.F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle, Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2021

The Coronavirus Standards Working Group’s roadmap for improved population testing

por Mercer, Tim, Almond, Neil, Crone, Michael A., Chain, Patrick S. G., Deshpande, Alina, Eveleigh, Deepa, Freemont, Paul, Fuchs, Sebastien, Garlick, Russell, Huggett, Jim, Kammel, Martin, Li, Po-E, Milavec, Mojca, Marlowe, Elizabeth M., O’Sullivan, Denise M., Page, Mark, Pestano, Gary A., Suliman, Sara, Simen, Birgitte, Sninsky, John J., Sopchak, Lynne, Tato, Cristina M., Vallone, Peter M., Vandesompele, Jo, White, Thomas J., Zeichhardt, Heinz, Salit, Marc
Publicado 2022

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

por Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F., Le, Khoa, Mahan, Alison, Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M., Simen, Birgitte B., St. John, Elizabeth P., Chan-Hui, Po-Ying, Swiderek, Kristine, Kleinstein, Stephen H., Alter, Galit, Seaman, Michael S., Chakraborty, Arup K., Koller, Daphne, Wilson, Ian A., Church, George M., Burton, Dennis R., Poignard, Pascal
Publicado 2013

Correction: The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

por Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F., Le, Khoa, Mahan, Alison, Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M., Simen, Birgitte B., St. John, Elizabeth P., Chan-Hui, Po-Ying, Swiderek, Kristine, Kleinstein, Stephen H., Alter, Galit, Seaman, Michael S., Chakraborty, Arup K., Koller, Daphne, Wilson, Ian A., Church, George M., Burton, Dennis R., Poignard, Pascal
Publicado 2013

1525. The Impact of Traveler-Based Genomic Surveillance on SARS-CoV-2 Variant Detection in Arriving International Air Travelers– United States, November 29, 2021-April 24, 2022

por Appiah, Grace D, Smith, Teresa C, Wegrzyn, Renee, Morfino, Robert C, Guagliardo, Sarah, Milford, Scott, Milford, Scott, Walker, Allison Taylor, Ernst, Ezra T, Darrow, William W, Li, Siyao Lisa, Aichele, Thomas, Rothstein, Andrew, Rome, Benjamin, MacCannell, Duncan, Woronoff, Gabrielle, Robison, Keith, Dai, Dongjuan, Girinathan, Brintha, Hicks, Allison, Cosca, Bryan, Plocik, Alex, Simen, Birgitte, Moriarty, Leah, Cetron, Martin S, Friedman, Cindy R, Friedman, Cindy R, Friedman, Cindy R, Friedman, Cindy R
Publicado 2022

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Nika, Ioanna, van der Lugt, Mart J., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B. F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle A., Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F., Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L., Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2022

Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated

por Liao, Hua-Xin, Chen, Xi, Munshaw, Supriya, Zhang, Ruijun, Marshall, Dawn J., Vandergrift, Nathan, Whitesides, John F., Lu, Xiaozhi, Yu, Jae-Sung, Hwang, Kwan-Ki, Gao, Feng, Markowitz, Martin, Heath, Sonya L., Bar, Katharine J., Goepfert, Paul A., Montefiori, David C., Shaw, George C., Alam, S. Munir, Margolis, David M., Denny, Thomas N., Boyd, Scott D., Marshal, Eleanor, Egholm, Michael, Simen, Birgitte B., Hanczaruk, Bozena, Fire, Andrew Z., Voss, Gerald, Kelsoe, Garnett, Tomaras, Georgia D., Moody, M. Anthony, Kepler, Thomas B., Haynes, Barton F.
Publicado 2011