Enter exitrons

por Staiger, Dorothee, Simpson, Gordon G.
Publicado 2015

Crystal Structure of the SPOC Domain of the Arabidopsis Flowering Regulator FPA

por Zhang, Yinglu, Rataj, Katarzyna, Simpson, Gordon G., Tong, Liang
Publicado 2016

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

por Parker, Matthew T., Knop, Katarzyna, Barton, Geoffrey J., Simpson, Gordon G.
Publicado 2021

Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K

por Parker, Matthew T, Fica, Sebastian M, Barton, Geoffrey J, Simpson, Gordon G
Publicado 2023

Transcription Termination and Chimeric RNA Formation Controlled by Arabidopsis thaliana FPA

por Duc, Céline, Sherstnev, Alexander, Cole, Christian, Barton, Geoffrey J., Simpson, Gordon G.
Publicado 2013

How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana

por Froussios, Kimon, Schurch, Nick J, Mackinnon, Katarzyna, Gierliński, Marek, Duc, Céline, Simpson, Gordon G, Barton, Geoffrey J
Publicado 2019

Two zinc finger proteins with functions in m(6)A writing interact with HAKAI

por Zhang, Mi, Bodi, Zsuzsanna, Mackinnon, Katarzyna, Zhong, Silin, Archer, Nathan, Mongan, Nigel P., Simpson, Gordon G., Fray, Rupert G.
Publicado 2022

Direct Sequencing of Arabidopsis thaliana RNA Reveals Patterns of Cleavage and Polyadenylation

por Sherstnev, Alexander, Duc, Céline, Cole, Christian, Zacharaki, Vasiliki, Hornyik, Csaba, Ozsolak, Fatih, Milos, Patrice M., Barton, Geoffrey J., Simpson, Gordon G.
Publicado 2012

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m(6)A modification

por Parker, Matthew T, Knop, Katarzyna, Sherwood, Anna V, Schurch, Nicholas J, Mackinnon, Katarzyna, Gould, Peter D, Hall, Anthony JW, Barton, Geoffrey J, Simpson, Gordon G
Publicado 2020

U6 snRNA m6A modification is required for accurate and efficient cis- and trans-splicing of C. elegans mRNAs

por Shen, Aykut, Hencel, Katarzyna, Parker, Matthew T., Scott, Robyn, Skukan, Roberta, Adesina, Aduragbemi S., Metheringham, Carey L., Miska, Eric A., Nam, Yunsun, Haerty, Wilfried, Simpson, Gordon G., Akay, Alper
Publicado 2023

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

por Parker, Matthew T, Knop, Katarzyna, Zacharaki, Vasiliki, Sherwood, Anna V, Tomé, Daniel, Yu, Xuhong, Martin, Pascal GP, Beynon, Jim, Michaels, Scott D, Barton, Geoffrey J, Simpson, Gordon G
Publicado 2021

Improved Annotation of 3′ Untranslated Regions and Complex Loci by Combination of Strand-Specific Direct RNA Sequencing, RNA-Seq and ESTs

por Schurch, Nicholas J., Cole, Christian, Sherstnev, Alexander, Song, Junfang, Duc, Céline, Storey, Kate G., McLean, W. H. Irwin, Brown, Sara J., Simpson, Gordon G., Barton, Geoffrey J.
Publicado 2014

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

por Schurch, Nicholas J., Schofield, Pietá, Gierliński, Marek, Cole, Christian, Sherstnev, Alexander, Singh, Vijender, Wrobel, Nicola, Gharbi, Karim, Simpson, Gordon G., Owen-Hughes, Tom, Blaxter, Mark, Barton, Geoffrey J.
Publicado 2016

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

por Lyons, Rebecca, Iwase, Akira, Gänsewig, Thomas, Sherstnev, Alexander, Duc, Céline, Barton, Geoffrey J., Hanada, Kousuke, Higuchi-Takeuchi, Mieko, Matsui, Minami, Sugimoto, Keiko, Kazan, Kemal, Simpson, Gordon G., Shirasu, Ken
Publicado 2013

m(6)A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5’ splice site

por Parker, Matthew T, Soanes, Beth K, Kusakina, Jelena, Larrieu, Antoine, Knop, Katarzyna, Joy, Nisha, Breidenbach, Friedrich, Sherwood, Anna V, Barton, Geoffrey J, Fica, Sebastian M, Davies, Brendan H, Simpson, Gordon G
Publicado 2022

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

por Bredeson, Jessen V., Lyons, Jessica B., Oniyinde, Ibukun O., Okereke, Nneka R., Kolade, Olufisayo, Nnabue, Ikenna, Nwadili, Christian O., Hřibová, Eva, Parker, Matthew, Nwogha, Jeremiah, Shu, Shengqiang, Carlson, Joseph, Kariba, Robert, Muthemba, Samuel, Knop, Katarzyna, Barton, Geoffrey J., Sherwood, Anna V., Lopez-Montes, Antonio, Asiedu, Robert, Jamnadass, Ramni, Muchugi, Alice, Goodstein, David, Egesi, Chiedozie N., Featherston, Jonathan, Asfaw, Asrat, Simpson, Gordon G., Doležel, Jaroslav, Hendre, Prasad S., Van Deynze, Allen, Kumar, Pullikanti Lava, Obidiegwu, Jude E., Bhattacharjee, Ranjana, Rokhsar, Daniel S.
Publicado 2022