Bioinformatic Description of Immunotherapy Targets for Pediatric T-Cell Leukemia and the Impact of Normal Gene Sets Used for Comparison

por Orentas, Rimas J., Nordlund, Jessica, He, Jianbin, Sindiri, Sivasish, Mackall, Crystal, Fry, Terry J., Khan, Javed
Publicado 2014

Paired Expression Analysis of Tumor Cell Surface Antigens

por Orentas, Rimas J., Sindiri, Sivasish, Duris, Christine, Wen, Xinyu, He, Jianbin, Wei, Jun S., Jarzembowski, Jason, Khan, Javed
Publicado 2017

Specific recognition of an FGFR2 fusion by tumor infiltrating lymphocytes from a patient with metastatic cholangiocarcinoma

por White, Bradley Sinclair, Sindiri, Sivasish, Hill, Victoria, Gasmi, Billel, Nah, Shirley, Gartner, Jared J, Prickett, Todd D, Li, Yong, Gurusamy, Devikala, Robbins, Paul, Rosenberg, Steven A, Leko, Vid
Publicado 2023

Using patient-derived tumor organoids from common epithelial cancers to analyze personalized T-cell responses to neoantigens

por Parikh, Anup Y., Masi, Robert, Gasmi, Billel, Hanada, Ken-ichi, Parkhurst, Maria, Gartner, Jared, Sindiri, Sivasish, Prickett, Todd, Robbins, Paul, Zacharakis, Nikolaos, Beshiri, Mike, Kelly, Kathleen, Rosenberg, Steven A., Yang, James C.
Publicado 2023

Myogenic regulatory transcription factors regulate growth in rhabdomyosarcoma

por Tenente, Inês M, Hayes, Madeline N, Ignatius, Myron S, McCarthy, Karin, Yohe, Marielle, Sindiri, Sivasish, Gryder, Berkley, Oliveira, Mariana L, Ramakrishnan, Ashwin, Tang, Qin, Chen, Eleanor Y, Petur Nielsen, G, Khan, Javed, Langenau, David M
Publicado 2017

Notch signaling and efficacy of PD-1/PD-L1 blockade in relapsed small cell lung cancer

por Roper, Nitin, Velez, Moises J., Chiappori, Alberto, Kim, Yoo Sun, Wei, Jun S., Sindiri, Sivasish, Takahashi, Nobuyuki, Mulford, Deborah, Kumar, Suresh, Ylaya, Kris, Trindade, Christopher, Manukyan, Irena, Brown, Anna-Leigh, Trepel, Jane B., Lee, Jung-Min, Hewitt, Stephen, Khan, Javed, Thomas, Anish
Publicado 2021

Tumor Mutation Burden, Expressed Neoantigens and the Immune Microenvironment in Diffuse Gliomas

por Yu, Guangyang, Pang, Ying, Merchant, Mythili, Kesserwan, Chimene, Gangalapudi, Vineela, Abdelmaksoud, Abdalla, Ranjan, Alice, Kim, Olga, Wei, Jun S., Chou, Hsien-Chao, Wen, Xinyu, Sindiri, Sivasish, Song, Young K., Xi, Liqiang, Kaplan, Rosandra N., Armstrong, Terri S., Gilbert, Mark R., Aldape, Kenneth, Khan, Javed, Wu, Jing
Publicado 2021

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

por Roper, Nitin, Gao, Shaojian, Maity, Tapan K., Banday, A. Rouf, Zhang, Xu, Venugopalan, Abhilash, Cultraro, Constance M., Patidar, Rajesh, Sindiri, Sivasish, Brown, Anna-Leigh, Goncearenco, Alexander, Panchenko, Anna R., Biswas, Romi, Thomas, Anish, Rajan, Arun, Carter, Corey A., Kleiner, David E., Hewitt, Stephen M., Khan, Javed, Prokunina-Olsson, Ludmila, Guha, Udayan
Publicado 2019

The NOTCH1/SNAIL1/MEF2C Pathway Regulates Growth and Self-Renewal in Embryonal Rhabdomyosarcoma

por Ignatius, Myron S., Hayes, Madeline N., Lobbardi, Riadh, Chen, Eleanor Y., McCarthy, Karin M., Sreenivas, Prethish, Motala, Zainab, Durbin, Adam D., Molodtsov, Aleksey, Reeder, Sophia, Jin, Alexander, Sindiri, Sivasish, Beleyea, Brian C., Bhere, Deepak, Alexander, Matthew S., Shah, Khalid, Keller, Charles, Linardic, Corinne M., Nielsen, Petur G., Malkin, David, Khan, Javed, Langenau, David M.
Publicado 2017

The Genomic Landscape of the Ewing Sarcoma Family of Tumors Reveals Recurrent STAG2 Mutation

por Brohl, Andrew S., Solomon, David A., Chang, Wendy, Wang, Jianjun, Song, Young, Sindiri, Sivasish, Patidar, Rajesh, Hurd, Laura, Chen, Li, Shern, Jack F., Liao, Hongling, Wen, Xinyu, Gerard, Julia, Kim, Jung-Sik, Lopez Guerrero, Jose Antonio, Machado, Isidro, Wai, Daniel H., Picci, Piero, Triche, Timothy, Horvai, Andrew E., Miettinen, Markku, Wei, Jun S., Catchpool, Daniel, Llombart-Bosch, Antonio, Waldman, Todd, Khan, Javed
Publicado 2014

Recurrent inactivating RASA2 mutations in melanoma

por Arafeh, Rand, Qutob, Nouar, Emmanuel, Rafi, Keren-Paz, Alona, Madore, Jason, Elkahloun, Abdel, Wilmott, James S., Gartner, Jared J., Di Pizio, Antonella, Winograd-Katz, Sabina, Sindiri, Sivasish, Rotkopf, Ron, Dutton-Regester, Ken, Johansson, Peter, Pritchard, Antonia, Waddell, Nicola, Hill, Victoria K., Lin, Jimmy C., Hevroni, Yael, Rosenberg, Steven A., Khan, Javed, Ben-Dor, Shifra, Niv, Masha Y., Ulitsky, Igor, Mann, Graham J, Scolyer, Richard A., Hayward, Nicholas K., Samuels, Yardena
Publicado 2015

Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer

por Roper, Nitin, Brown, Anna-Leigh, Wei, Jun S., Pack, Svetlana, Trindade, Christopher, Kim, Chul, Restifo, Olivia, Gao, Shaojian, Sindiri, Sivasish, Mehrabadi, Farid, El Meskini, Rajaa, Ohler, Zoe Weaver, Maity, Tapan K., Venugopalan, Abhilash, Cultraro, Constance M., Akoth, Elizabeth, Padiernos, Emerson, Chen, Haobin, Kesarwala, Aparna, Smart, DeeDee K., Nilubol, Naris, Rajan, Arun, Piotrowska, Zofia, Xi, Liqiang, Raffeld, Mark, Panchenko, Anna R., Sahinalp, Cenk, Hewitt, Stephen, Hoang, Chuong D., Khan, Javed, Guha, Udayan
Publicado 2020

Genomic Classification and Clinical Outcome in Rhabdomyosarcoma: A Report From an International Consortium

por Shern, Jack F., Selfe, Joanna, Izquierdo, Elisa, Patidar, Rajesh, Chou, Hsien-Chao, Song, Young K., Yohe, Marielle E., Sindiri, Sivasish, Wei, Jun, Wen, Xinyu, Rudzinski, Erin R., Barkauskas, Donald A., Lo, Tammy, Hall, David, Linardic, Corinne M., Hughes, Debbie, Jamal, Sabri, Jenney, Meriel, Chisholm, Julia, Brown, Rebecca, Jones, Kristine, Hicks, Belynda, Angelini, Paola, George, Sally, Chesler, Louis, Hubank, Michael, Kelsey, Anna, Gatz, Susanne A., Skapek, Stephen X., Hawkins, Douglas S., Shipley, Janet M., Khan, Javed
Publicado 2021

Immuno-transcriptomic profiling of extracranial pediatric solid malignancies

por Brohl, Andrew S., Sindiri, Sivasish, Wei, Jun S., Milewski, David, Chou, Hsien-Chao, Song, Young K., Wen, Xinyu, Kumar, Jeetendra, Reardon, Hue V., Mudunuri, Uma S., Collins, Jack R., Nagaraj, Sushma, Gangalapudi, Vineela, Tyagi, Manoj, Zhu, Yuelin J., Masih, Katherine E., Yohe, Marielle E., Shern, Jack F., Qi, Yue, Guha, Udayan, Catchpoole, Daniel, Orentas, Rimas J., Kuznetsov, Igor B., Llosa, Nicolas J., Ligon, John A., Turpin, Brian K., Leino, Daniel G., Iwata, Shintaro, Andrulis, Irene L., Wunder, Jay S., Toledo, Silvia R.C., Meltzer, Paul S., Lau, Ching, Teicher, Beverly A., Magnan, Heather, Ladanyi, Marc, Khan, Javed
Publicado 2021

Adoptive Cellular Therapy with Autologous Tumor-Infiltrating Lymphocytes and T-cell Receptor–Engineered T Cells Targeting Common p53 Neoantigens in Human Solid Tumors

por Kim, Sanghyun P., Vale, Nolan R., Zacharakis, Nikolaos, Krishna, Sri, Yu, Zhiya, Gasmi, Billel, Gartner, Jared J., Sindiri, Sivasish, Malekzadeh, Parisa, Deniger, Drew C., Lowery, Frank J., Parkhurst, Maria R., Ngo, Lien T., Ray, Satyajit, Li, Yong F., Hill, Victoria, Florentin, Maria, Masi, Robert V., Paria, Biman C., Levin, Noam, Bera, Alakesh, Hedges, Elizabeth A., Choi, Agnes, Chatani, Praveen D., Parikh, Anup Y., Levi, Shoshana, Seitter, Samantha, Lu, Yong-Chen, Zheng, Zhili, Prickett, Todd D., Jia, Li, Hernandez, Jonathan M., Hoang, Chuong D., Robbins, Paul F., Goff, Stephanie L., Sherry, Richard M., Yang, James C., Rosenberg, Steven A.
Publicado 2022