Implementation of the Rank-Weighted Co-localization (RWC) algorithm in multiple image analysis platforms for quantitative analysis of microscopy images

por Singan, Vasanth R., Simpson, Jeremy C.
Publicado 2016

wFleaBase: the Daphnia genome database

por Colbourne, John K, Singan, Vasanth R, Gilbert, Don G
Publicado 2005

A method for improved clustering and classification of microscopy images using quantitative co-localization coefficients

por Singan, Vasanth R, Handzic, Kenan, Curran, Kathleen M, Simpson, Jeremy C
Publicado 2012

Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images

por Singan, Vasanth R, Jones, Thouis R, Curran, Kathleen M, Simpson, Jeremy C
Publicado 2011

The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis

por Wong-Bajracharya, Johanna, Singan, Vasanth R., Monti, Remo, Plett, Krista L., Ng, Vivian, Grigoriev, Igor V., Martin, Francis M., Anderson, Ian C., Plett, Jonathan M.
Publicado 2022

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

por Xiong, Yi, Wu, Vincent W., Lubbe, Andrea, Qin, Lina, Deng, Siwen, Kennedy, Megan, Bauer, Diane, Singan, Vasanth R., Barry, Kerrie, Northen, Trent R., Grigoriev, Igor V., Glass, N. Louise
Publicado 2017

The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa

por Thieme, Nils, Wu, Vincent W., Dietschmann, Axel, Salamov, Asaf A., Wang, Mei, Johnson, Jenifer, Singan, Vasanth R., Grigoriev, Igor V., Glass, N. Louise, Somerville, Chris R., Benz, J. Philipp
Publicado 2017

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress

por Banerjee, Deepanwita, Eng, Thomas, Sasaki, Yusuke, Srinivasan, Aparajitha, Oka, Asun, Herbert, Robin A., Trinh, Jessica, Singan, Vasanth R., Sun, Ning, Putnam, Dan, Scown, Corinne D., Simmons, Blake, Mukhopadhyay, Aindrila
Publicado 2021

Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale

por Banerjee, Deepanwita, Eng, Thomas, Lau, Andrew K., Sasaki, Yusuke, Wang, Brenda, Chen, Yan, Prahl, Jan-Philip, Singan, Vasanth R., Herbert, Robin A., Liu, Yuzhong, Tanjore, Deepti, Petzold, Christopher J., Keasling, Jay D., Mukhopadhyay, Aindrila
Publicado 2020

Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses

por Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicolas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E., Daudi, Arsalan, Petzold, Christopher J., Singan, Vasanth R., Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L., Zipfel, Cyril, Ronald, Pamela C.
Publicado 2015

Correction: Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses

por Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E., Daudi, Arsalan, Petzold, Christopher J., Singan, Vasanth R., Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L., Zipfel, Cyril, Ronald, Pamela C.
Publicado 2015

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus

por Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise
Publicado 2020

Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect

por Xie, Meng, Zhang, Jin, Singan, Vasanth R., McGranahan, Melissa J., LaFayette, Peter R., Jawdy, Sara S., Engle, Nancy, Doeppke, Crissa, Tschaplinski, Timothy J., Davis, Mark F., Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Parrott, Wayne A., Chen, Feng, Tuskan, Gerald A., Chen, Jin‐Gui, Muchero, Wellington
Publicado 2020

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

por Daly, Paul, van Munster, Jolanda M., Blythe, Martin J., Ibbett, Roger, Kokolski, Matt, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R., Barry, Kerrie W., Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J., Chan, Leanne Jade G., Pullan, Steven T., Delmas, Stéphane, Waldron, Paul R., Grigoriev, Igor V., Tucker, Gregory A., Simmons, Blake A., Archer, David B.
Publicado 2017

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

por van Munster, Jolanda M., Daly, Paul, Blythe, Martin J., Ibbett, Roger, Kokolski, Matt, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R., Barry, Kerrie W., Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J., Chan, Leanne Jade G., Arvas, Mikko, Raulo, Roxane, Pullan, Steven T., Delmas, Stéphane, Grigoriev, Igor V., Tucker, Gregory A., Simmons, Blake A., Archer, David B.
Publicado 2020

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

por Varoquaux, Nelle, Cole, Benjamin, Gao, Cheng, Pierroz, Grady, Baker, Christopher R., Patel, Dhruv, Madera, Mary, Jeffers, Tim, Hollingsworth, Joy, Sievert, Julie, Yoshinaga, Yuko, Owiti, Judith A., Singan, Vasanth R., DeGraaf, Stephanie, Xu, Ling, Blow, Matthew J., Harrison, Maria J., Visel, Axel, Jansson, Christer, Niyogi, Krishna K., Hutmacher, Robert, Coleman-Derr, Devin, O’Malley, Ronan C., Taylor, John W., Dahlberg, Jeffery, Vogel, John P., Lemaux, Peggy G., Purdom, Elizabeth
Publicado 2019

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

por Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Publicado 2020

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

por Lovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj, Sharma, Rita, Stewart, Ada, Singan, Vasanth R., Tang, Yuhong, Thibivillier, Sandra, Webber, Jenell, Weng, Xiaoyu, Williams, Melissa, Wu, Guohong Albert, Yoshinaga, Yuko, Zane, Matthew, Zhang, Li, Zhang, Jiyi, Behrman, Kathrine D., Boe, Arvid R., Fay, Philip A., Fritschi, Felix B., Jastrow, Julie D., Lloyd-Reilley, John, Martínez-Reyna, Juan Manuel, Matamala, Roser, Mitchell, Robert B., Rouquette, Francis M., Ronald, Pamela, Saha, Malay, Tobias, Christian M., Udvardi, Michael, Wing, Rod A., Wu, Yanqi, Bartley, Laura E., Casler, Michael, Devos, Katrien M., Lowry, David B., Rokhsar, Daniel S., Grimwood, Jane, Juenger, Thomas E., Schmutz, Jeremy
Publicado 2021