Environmental Statistics and Optimal Regulation

por Sivak, David A., Thomson, Matt
Publicado 2014

Energy Dissipation and Information Flow in Coupled Markovian Systems

por Quenneville, Matthew E., Sivak, David A.
Publicado 2018

Time Step Rescaling Recovers Continuous-Time Dynamical Properties for Discrete-Time Langevin Integration of Nonequilibrium Systems

por Sivak, David A., Chodera, John D., Crooks, Gavin E.
Publicado 2014

Optimal Control of Transitions between Nonequilibrium Steady States

por Zulkowski, Patrick R., Sivak, David A., DeWeese, Michael R.
Publicado 2013

Stochastic microbiome assembly depends on context

por Jones, Eric W., Carlson, Jean M., Sivak, David A., Ludington, William B.
Publicado 2022

First-passage-time statistics of growing microbial populations carry an imprint of initial conditions

por Jones, Eric W., Derrick, Joshua, Nisbet, Roger M., Ludington, William B., Sivak, David A.
Publicado 2023

Quantifying Configuration-Sampling Error in Langevin Simulations of Complex Molecular Systems

por Fass, Josh, Sivak, David A., Crooks, Gavin E., Beauchamp, Kyle A., Leimkuhler, Benedict, Chodera, John D.
Publicado 2018

D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response

por Jiang, Jialong, Chen, Sisi, Tsou, Tiffany, McGinnis, Christopher S., Khazaei, Tahmineh, Zhu, Qin, Park, Jong H., Strazhnik, Inna-Marie, Hanna, John, Chow, Eric D., Sivak, David A., Gartner, Zev J., Thomson, Matt
Publicado 2023

A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota

por Dodge, Ren, Jones, Eric W., Zhu, Haolong, Obadia, Benjamin, Martinez, Daniel J., Wang, Chenhui, Aranda-Díaz, Andrés, Aumiller, Kevin, Liu, Zhexian, Voltolini, Marco, Brodie, Eoin L., Huang, Kerwyn Casey, Carlson, Jean M., Sivak, David A., Spradling, Allan C., Ludington, William B.
Publicado 2023