Evolution, ecology and the engineered organism: lessons for synthetic biology

por Skerker, Jeffrey M, Lucks, Julius B, Arkin, Adam P
Publicado 2009

Two-Component Signal Transduction Pathways Regulating Growth and Cell Cycle Progression in a Bacterium: A System-Level Analysis

por Skerker, Jeffrey M, Prasol, Melanie S, Perchuk, Barrett S, Biondi, Emanuele G, Laub, Michael T
Publicado 2005

Complete Genome Sequences of Four Escherichia coli ST95 Isolates from Bloodstream Infections

por Stephens, Craig M., Skerker, Jeffrey M., Sekhon, Manraj S., Arkin, Adam P., Riley, Lee W.
Publicado 2015

Systematic Dissection and Trajectory-Scanning Mutagenesis of the Molecular Interface That Ensures Specificity of Two-Component Signaling Pathways

por Capra, Emily J., Perchuk, Barrett S., Lubin, Emma A., Ashenberg, Orr, Skerker, Jeffrey M., Laub, Michael T.
Publicado 2010

Multiplexed CRISPR-Cas9-Based Genome Editing of Rhodosporidium toruloides

por Otoupal, Peter B., Ito, Masakazu, Arkin, Adam P., Magnuson, Jon K., Gladden, John M., Skerker, Jeffrey M.
Publicado 2019

Rational and Evolutionary Engineering Approaches Uncover a Small Set of Genetic Changes Efficient for Rapid Xylose Fermentation in Saccharomyces cerevisiae

por Kim, Soo Rin, Skerker, Jeffrey M., Kang, Wei, Lesmana, Anastashia, Wei, Na, Arkin, Adam P., Jin, Yong-Su
Publicado 2013

Barcoded reciprocal hemizygosity analysis via sequencing illuminates the complex genetic basis of yeast thermotolerance

por Abrams, Melanie B, Chuong, Julie N, AlZaben, Faisal, Dubin, Claire A, Skerker, Jeffrey M, Brem, Rachel B
Publicado 2021

The Frequency of Sex: Population Genomics Reveals Differences in Recombination and Population Structure of the Aflatoxin-Producing Fungus Aspergillus flavus

por Drott, Milton T., Satterlee, Tatum R., Skerker, Jeffrey M., Pfannenstiel, Brandon T., Glass, N. Louise, Keller, Nancy P., Milgroom, Michael G.
Publicado 2020

Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site

por Ray, Jayashree, Waters, R. Jordan, Skerker, Jeffrey M., Kuehl, Jennifer V., Price, Morgan N., Huang, Jiawen, Chakraborty, Romy, Arkin, Adam P., Deutschbauer, Adam
Publicado 2015

Indirect and suboptimal control of gene expression is widespread in bacteria

por Price, Morgan N, Deutschbauer, Adam M, Skerker, Jeffrey M, Wetmore, Kelly M, Ruths, Troy, Mar, Jordan S, Kuehl, Jennifer V, Shao, Wenjun, Arkin, Adam P
Publicado 2013

Genetic dissection of interspecific differences in yeast thermotolerance

por Weiss, Carly V., Roop, Jeremy I., Hackley, Rylee K., Chuong, Julie N., Grigoriev, Igor V., Arkin, Adam P., Skerker, Jeffrey M., Brem, Rachel B.
Publicado 2018

Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357

por Skerker, Jeffrey M, Pianalto, Kaila M, Mondo, Stephen J, Yang, Kunlong, Arkin, Adam P, Keller, Nancy P, Grigoriev, Igor V, Louise Glass, N Louise
Publicado 2021

Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans-acting effects influencing species-dependent essential genes

por Sanchez, Monica R., Payen, Celia, Cheong, Frances, Hovde, Blake T., Bissonnette, Sarah, Arkin, Adam P., Skerker, Jeffrey M., Brem, Rachel B., Caudy, Amy A., Dunham, Maitreya J.
Publicado 2019

Exploiting nonionic surfactants to enhance fatty alcohol production in Rhodosporidium toruloides

por Liu, Di, Geiselman, Gina M., Coradetti, Samuel, Cheng, Ya‐Fang, Kirby, James, Prahl, Jan‐Philip, Jacobson, Oslo, Sundstrom, Eric R., Tanjore, Deepti, Skerker, Jeffrey M., Gladden, John
Publicado 2020

Selection of chromosomal DNA libraries using a multiplex CRISPR system

por Ryan, Owen W, Skerker, Jeffrey M, Maurer, Matthew J, Li, Xin, Tsai, Jordan C, Poddar, Snigdha, Lee, Michael E, DeLoache, Will, Dueber, John E, Arkin, Adam P, Cate, Jamie HD
Publicado 2014

Genomewide and Enzymatic Analysis Reveals Efficient d-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides

por Protzko, Ryan J., Hach, Christina A., Coradetti, Samuel T., Hackhofer, Magdalena A., Magosch, Sonja, Thieme, Nils, Geiselman, Gina M., Arkin, Adam P., Skerker, Jeffrey M., Dueber, John E., Benz, J. Philipp
Publicado 2019

Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides

por Zhuang, Xun, Kilian, Oliver, Monroe, Eric, Ito, Masakazu, Tran-Gymfi, Mary Bao, Liu, Fang, Davis, Ryan W., Mirsiaghi, Mona, Sundstrom, Eric, Pray, Todd, Skerker, Jeffrey M., George, Anthe, Gladden, John M.
Publicado 2019

A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides

por Nora, Luísa Czamanski, Wehrs, Maren, Kim, Joonhoon, Cheng, Jan-Fang, Tarver, Angela, Simmons, Blake A., Magnuson, Jon, Harmon-Smith, Miranda, Silva-Rocha, Rafael, Gladden, John M., Mukhopadhyay, Aindrila, Skerker, Jeffrey M., Kirby, James
Publicado 2019

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

por Coradetti, Samuel T, Pinel, Dominic, Geiselman, Gina M, Ito, Masakazu, Mondo, Stephen J, Reilly, Morgann C, Cheng, Ya-Fang, Bauer, Stefan, Grigoriev, Igor V, Gladden, John M, Simmons, Blake A, Brem, Rachel B, Arkin, Adam P, Skerker, Jeffrey M
Publicado 2018

Engineering Kluyveromyces marxianus as a Robust Synthetic Biology Platform Host

por Cernak, Paul, Estrela, Raissa, Poddar, Snigdha, Skerker, Jeffrey M., Cheng, Ya-Fang, Carlson, Annika K., Chen, Berling, Glynn, Victoria M., Furlan, Monique, Ryan, Owen W., Donnelly, Marie K., Arkin, Adam P., Taylor, John W., Cate, Jamie H. D.
Publicado 2018