Inference of clonal selection in cancer populations using single-cell sequencing data

por Skums, Pavel, Tsyvina, Viachaslau, Zelikovsky, Alex
Publicado 2019

Inference of mutability landscapes of tumors from single cell sequencing data

por Tsyvina, Viachaslau, Zelikovsky, Alex, Snir, Sagi, Skums, Pavel
Publicado 2020

Scale-Free Spanning Trees and Their Application in Genomic Epidemiology

por Orlovich, Yury, Kukharenko, Kirill, Kaibel, Volker, Skums, Pavel
Publicado 2021

Global transmission network of SARS-CoV-2: from outbreak to pandemic

por Skums, Pavel, Kirpich, Alexander, Baykal, Pelin Icer, Zelikovsky, Alex, Chowell, Gerardo
Publicado 2020

Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches

por Campo, David S., Gussler, Joseph W., Sue, Amanda, Skums, Pavel, Khudyakov, Yury
Publicado 2020

Analysis of heterogeneous genomic samples using image normalization and machine learning

por Basodi, Sunitha, Baykal, Pelin Icer, Zelikovsky, Alex, Skums, Pavel, Pan, Yi
Publicado 2020

Primary case inference in viral outbreaks through analysis of intra-host variant population

por Gussler, J. Walker, Campo, David S., Dimitrova, Zoya, Skums, Pavel, Khudyakov, Yury
Publicado 2022

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

por Tsyvina, Viachaslau, Campo, David S., Sims, Seth, Zelikovsky, Alex, Khudyakov, Yury, Skums, Pavel
Publicado 2018

Using earth mover’s distance for viral outbreak investigations

por Melnyk, Andrew, Knyazev, Sergey, Vannberg, Fredrik, Bunimovich, Leonid, Skums, Pavel, Zelikovsky, Alex
Publicado 2020

Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections

por Icer Baykal, Pelin B, Lara, James, Khudyakov, Yury, Zelikovsky, Alex, Skums, Pavel
Publicado 2020

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

por Skums, Pavel, Mancuso, Nicholas, Artyomenko, Alexander, Tork, Bassam, Mandoiu, Ion, Khudyakov, Yury, Zelikovsky, Alex
Publicado 2013

Inference of genetic relatedness between viral quasispecies from sequencing data

por Glebova, Olga, Knyazev, Sergey, Melnyk, Andrew, Artyomenko, Alexander, Khudyakov, Yury, Zelikovsky, Alex, Skums, Pavel
Publicado 2017

Excess mortality in Belarus during the COVID-19 pandemic as the case study of a country with limited non-pharmaceutical interventions and limited reporting

por Kirpich, Alexander, Shishkin, Aleksandr, Weppelmann, Thomas A., Tchernov, Alexander Perez, Skums, Pavel, Gankin, Yuriy
Publicado 2022

Investigating the first stage of the COVID-19 pandemic in Ukraine using epidemiological and genomic data

por Gankin, Yuriy, Nemira, Alina, Koniukhovskii, Vladimir, Chowell, Gerardo, Weppelmann, Thomas A., Skums, Pavel, Kirpich, Alexander
Publicado 2021

Investigating the first stage of the COVID-19 pandemic in Ukraine using epidemiological and genomic data

por Gankin, Yuriy, Nemira, Alina, Koniukhovskii, Vladimir, Chowell, Gerardo, Weppelmann, Thomas A., Skums, Pavel, Kirpich, Alexander
Publicado 2021

Excess mortality in Ukraine during the course of COVID-19 pandemic in 2020–2021

por Shishkin, Aleksandr, Lhewa, Pema, Yang, Chen, Gankin, Yuriy, Chowell, Gerardo, Norris, Michael, Skums, Pavel, Kirpich, Alexander
Publicado 2023

Efficient error correction for next-generation sequencing of viral amplicons

por Skums, Pavel, Dimitrova, Zoya, Campo, David S, Vaughan, Gilberto, Rossi, Livia, Forbi, Joseph C, Yokosawa, Jonny, Zelikovsky, Alex, Khudyakov, Yury
Publicado 2012

Drug-resistance of a viral population and its individual intra-host variants during the first 48 hours of therapy

por Campo, David S., Skums, Pavel, Dimitrova, Zoya, Vaughan, Gilberto, Forbi, Joseph C., Teo, Chong-Gee, Khudyakov, Yury, Lau, Daryl T.-Y.
Publicado 2014

Development of an interactive, agent-based local stochastic model of COVID-19 transmission and evaluation of mitigation strategies illustrated for the state of Massachusetts, USA

por Kirpich, Alexander, Koniukhovskii, Vladimir, Shvartc, Vladimir, Skums, Pavel, Weppelmann, Thomas A., Imyanitov, Evgeny, Semyonov, Semyon, Barsukov, Konstantin, Gankin, Yuriy
Publicado 2021

Next-generation sequencing reveals large connected networks of intra-host HCV variants

por Campo, David S, Dimitrova, Zoya, Yamasaki, Lilian, Skums, Pavel, Lau, Daryl TY, Vaughan, Gilberto, Forbi, Joseph C, Teo, Chong-Gee, Khudyakov, Yury
Publicado 2014