Dr.VAE: improving drug response prediction via modeling of drug perturbation effects

por Rampášek, Ladislav, Hidru, Daniel, Smirnov, Petr, Haibe-Kains, Benjamin, Goldenberg, Anna
Publicado 2019

Creating reproducible pharmacogenomic analysis pipelines

por Mammoliti, Anthony, Smirnov, Petr, Safikhani, Zhaleh, Ba-Alawi, Wail, Haibe-Kains, Benjamin
Publicado 2019

Machine learning approaches to drug response prediction: challenges and recent progress

por Adam, George, Rampášek, Ladislav, Safikhani, Zhaleh, Smirnov, Petr, Haibe-Kains, Benjamin, Goldenberg, Anna
Publicado 2020

Gene isoforms as expression-based biomarkers predictive of drug response in vitro

por Safikhani, Zhaleh, Smirnov, Petr, Thu, Kelsie L., Silvester, Jennifer, El-Hachem, Nehme, Quevedo, Rene, Lupien, Mathieu, Mak, Tak W., Cescon, David, Haibe-Kains, Benjamin
Publicado 2017

PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies

por Smirnov, Petr, Kofia, Victor, Maru, Alexander, Freeman, Mark, Ho, Chantal, El-Hachem, Nehme, Adam, George-Alexandru, Ba-alawi, Wail, Safikhani, Zhaleh, Haibe-Kains, Benjamin
Publicado 2018

Author Correction: Gene isoforms as expression-based biomarkers predictive of drug response in vitro

por Safikhani, Zhaleh, Smirnov, Petr, Thu, Kelsie L., Silvester, Jennifer, El-Hachem, Nehme, Quevedo, Rene, Lupien, Mathieu, Mak, Tak W., Cescon, David, Haibe-Kains, Benjamin
Publicado 2018

ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets

por Nair, Sisira Kadambat, Eeles, Christopher, Ho, Chantal, Beri, Gangesh, Yoo, Esther, Tkachuk, Denis, Tang, Amy, Nijrabi, Parwaiz, Smirnov, Petr, Seo, Heewon, Jennen, Danyel, Haibe-Kains, Benjamin
Publicado 2020

Evaluation of statistical approaches for association testing in noisy drug screening data

por Smirnov, Petr, Smith, Ian, Safikhani, Zhaleh, Ba-alawi, Wail, Khodakarami, Farnoosh, Lin, Eva, Yu, Yihong, Martin, Scott, Ortmann, Janosch, Aittokallio, Tero, Hafner, Marc, Haibe-Kains, Benjamin
Publicado 2022

Assessment of pharmacogenomic agreement

por Safikhani, Zhaleh, El-Hachem, Nehme, Quevedo, Rene, Smirnov, Petr, Goldenberg, Anna, Juul Birkbak, Nicolai, Mason, Christopher, Hatzis, Christos, Shi, Leming, Aerts, Hugo JWL, Quackenbush, John, Haibe-Kains, Benjamin
Publicado 2016

The mevalonate pathway is an actionable vulnerability of t(4;14)-positive multiple myeloma

por Longo, Joseph, Smirnov, Petr, Li, Zhihua, Branchard, Emily, van Leeuwen, Jenna E., Licht, Jonathan D., Haibe-Kains, Benjamin, Andrews, David W., Keats, Jonathan J., Pugh, Trevor J., Trudel, Suzanne, Penn, Linda Z.
Publicado 2020

Revisiting inconsistency in large pharmacogenomic studies

por Safikhani, Zhaleh, Smirnov, Petr, Freeman, Mark, El-Hachem, Nehme, She, Adrian, Rene, Quevedo, Goldenberg, Anna, Birkbak, Nicolai J., Hatzis, Christos, Shi, Leming, Beck, Andrew H., Aerts, Hugo J.W.L., Quackenbush, John, Haibe-Kains, Benjamin
Publicado 2017

Orchestrating and sharing large multimodal data for transparent and reproducible research

por Mammoliti, Anthony, Smirnov, Petr, Nakano, Minoru, Safikhani, Zhaleh, Eeles, Christopher, Seo, Heewon, Nair, Sisira Kadambat, Mer, Arvind S., Smith, Ian, Ho, Chantal, Beri, Gangesh, Kusko, Rebecca, Lin, Eva, Yu, Yihong, Martin, Scott, Hafner, Marc, Haibe-Kains, Benjamin
Publicado 2021

PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis

por Feizi, Nikta, Nair, Sisira Kadambat, Smirnov, Petr, Beri, Gangesh, Eeles, Christopher, Esfahani, Parinaz Nasr, Nakano, Minoru, Tkachuk, Denis, Mammoliti, Anthony, Gorobets, Evgeniya, Mer, Arvind Singh, Lin, Eva, Yu, Yihong, Martin, Scott, Hafner, Marc, Haibe-Kains, Benjamin
Publicado 2021