A Mechanistic Beta-Binomial Probability Model for mRNA Sequencing Data

por Smith, Gregory R., Birtwistle, Marc R.
Publicado 2016

Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation

por Smith, Gregory R., Xie, Lu, Schwartz, Russell
Publicado 2016

Network inference from perturbation time course data

por Sarmah, Deepraj, Smith, Gregory R., Bouhaddou, Mehdi, Stern, Alan D., Erskine, James, Birtwistle, Marc R.
Publicado 2022

Diverse effector and regulatory functions of fibro/adipogenic progenitors during skeletal muscle fibrosis in muscular dystrophy

por Wang, Xingyu, Chen, Jianming, Homma, Sachiko T., Wang, Yinhang, Smith, Gregory R., Ruf-Zamojski, Frederique, Sealfon, Stuart C., Zhou, Lan
Publicado 2022

Optimization of the Omni-ATAC protocol to chromatin accessibility profiling in snap-frozen rat adipose and muscle tissues

por Nair, Venugopalan D., Vasoya, Mital, Nair, Vishnu, Smith, Gregory R., Pincas, Hanna, Ge, Yongchao, Douglas, Collin M., Esser, Karyn A., Sealfon, Stuart C.
Publicado 2022

Relating individual cell division events to single-cell ERK and Akt activity time courses

por Stern, Alan D., Smith, Gregory R., Santos, Luis C., Sarmah, Deepraj, Zhang, Xiang, Lu, Xiaoming, Iuricich, Federico, Pandey, Gaurav, Iyengar, Ravi, Birtwistle, Marc R.
Publicado 2022

DMSO-mediated curing of several yeast prion variants involves Hsp104 expression and protein solubilization, and is decreased in several autophagy related gene (atg) mutants

por Dorweiler, Jane E., Obaoye, Joanna O., Oddo, Mitch J., Shilati, Francesca M., Scheidemantle, Grace M., Coleman, Thomas J., Reilly, Jacob A., Smith, Gregory R., Manogaran, Anita L.
Publicado 2020

Single-cell transcriptional profiles in human skeletal muscle

por Rubenstein, Aliza B., Smith, Gregory R., Raue, Ulrika, Begue, Gwénaëlle, Minchev, Kiril, Ruf-Zamojski, Frederique, Nair, Venugopalan D., Wang, Xingyu, Zhou, Lan, Zaslavsky, Elena, Trappe, Todd A., Trappe, Scott, Sealfon, Stuart C.
Publicado 2020

Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity

por Ruf-Zamojski, Frederique, Ge, Yongchao, Nair, Venugopalan, Zamojski, Michel, Pincas, Hanna, Toufaily, Chirine, Tome-Garcia, Jessica, Stoeckius, Marlon, Stephenson, William, Smith, Gregory R, Bernard, Daniel J, Tsankova, Nadejda M, Hartmann, Boris M, Fribourg, Miguel, Smibert, Peter, Swerdlow, Harold, Turgeon, Judith L, Sealfon, Stuart C
Publicado 2018

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

por Rubenstein, Aliza B., Smith, Gregory R., Zhang, Zidong, Chen, Xi, Chambers, Toby L., Ruf-Zamojski, Frederique, Mendelev, Natalia, Cheng, Wan Sze, Zamojski, Michel, Amper, Mary Anne S., Nair, Venugopalan D., Marderstein, Andrew R., Montgomery, Stephen B., Troyanskaya, Olga G., Zaslavsky, Elena, Trappe, Todd, Trappe, Scott, Sealfon, Stuart C.
Publicado 2023

Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms

por Zhang, Zidong, Zamojski, Michel, Smith, Gregory R., Willis, Thea L., Yianni, Val, Mendelev, Natalia, Pincas, Hanna, Seenarine, Nitish, Amper, Mary Anne S., Vasoya, Mital, Cheng, Wan Sze, Zaslavsky, Elena, Nair, Venugopalan D., Turgeon, Judith L., Bernard, Daniel J., Troyanskaya, Olga G., Andoniadou, Cynthia L., Sealfon, Stuart C., Ruf-Zamojski, Frederique
Publicado 2022

Multi-omic identification of key transcriptional regulatory programs during endurance exercise training

por Smith, Gregory R., Zhao, Bingqing, Lindholm, Malene E., Raja, Archana, Viggars, Mark, Pincas, Hanna, Gay, Nicole R., Sun, Yifei, Ge, Yongchao, Nair, Venugopalan D., Sanford, James A., Amper, Mary Anne S., Vasoya, Mital, Smith, Kevin S., Montgomery, Stephen, Zaslavsky, Elena, Bodine, Sue C., Esser, Karyn A., Walsh, Martin J., Snyder, Michael P.
Publicado 2023

OR01-06 Single Nucleus Multi-omics Analysis Identifies Cellular Trajectories And Dynamic Changes In Gene Expression And Chromatin Accessibility In The Pituitary During The Mouse Es...

por Ruf-Zamojski, Frederique Murielle, Cheng, Wan Sze, Zhang, Zidong, Zamojski, Michel, Smith, Gregory R, Chen, Xi, Mendelev, Natalia, Strupinsky, Galia, Alonso, Carlos Agustín, Gambino, Luisina Ongaro, Zhou, Xiang, Brule, Emilie, Amper, Mary Anne S, Hanna, Pincas, Nair, Venugopalan D, Andoniadou, Cynthia Lilian, Turgeon, Judith L, Troyanskaya, Olga, Zaslavsky, Elena, Bernard, Daniel J, Sealfon, Stuart C
Publicado 2023

Single Nucleus Transcriptome and Chromatin Accessibility Landscapes of Human Pituitaries

por Ruf-Zamojski, Frederique Murielle, Zhang, Zidong, Zamojski, Michel, Smith, Gregory R, Yianni, Val, Willis, Thea L, Mendelev, Natalia, Pincas, Hanna, Seenarine, Nitish, Amper, Mary Anne S, Vasoya, Mital, Zhou, Xiang, Gambino, Luisina Ongaro, Schang, Gauthier, Mofsowitz, Sagie, Nair, Venugopalan D, Welt, Corrine Kolka, Troyanskaya, Olga G, Turgeon, Judith L, Bernard, Daniel J, Andoniadou, Cynthia Lilian, Sealfon, Stuart C
Publicado 2021

SAT-298 Integrative Single-Cell Transcriptomic and Epigenomic Landscape of Mouse Anterior Pituitary Cell Types

por Ruf-Zamojski, Frederique Murielle, Zamojski, Michel A, Nudelman, German, Ge, Yongchao, Mendelev, Natalia, Smith, Gregory R, Zhou, Xiang, Toufaily, Chirine, Schang, Gauthier, Gambino, Luisina Ongaro, Liu, Hanqing, Gomez Castanon, Rosa G, Moriwaki, Mika, Nair, Venugopalan, Pincas, Hanna, Nery, Joseph R, Bartlett, Anna, Alridge, Andrew, Odle, Angela Katherine, Childs, Gwen V, Turgeon, Judith L, Welt, Corrine Kolka, Ecker, Joseph R, Bernard, Daniel J, Sealfon, Stuart C
Publicado 2020

Single nucleus multi-omics regulatory landscape of the murine pituitary

por Ruf-Zamojski, Frederique, Zhang, Zidong, Zamojski, Michel, Smith, Gregory R., Mendelev, Natalia, Liu, Hanqing, Nudelman, German, Moriwaki, Mika, Pincas, Hanna, Castanon, Rosa Gomez, Nair, Venugopalan D., Seenarine, Nitish, Amper, Mary Anne S., Zhou, Xiang, Ongaro, Luisina, Toufaily, Chirine, Schang, Gauthier, Nery, Joseph R., Bartlett, Anna, Aldridge, Andrew, Jain, Nimisha, Childs, Gwen V., Troyanskaya, Olga G., Ecker, Joseph R., Turgeon, Judith L., Welt, Corrine K., Bernard, Daniel J., Sealfon, Stuart C.
Publicado 2021

Antibody Responses to SARS-CoV-2 Following an Outbreak Among Marine Recruits With Asymptomatic or Mild Infection

por Ramos, Irene, Goforth, Carl, Soares-Schanoski, Alessandra, Weir, Dawn L., Samuels, Emily C., Phogat, Shreshta, Meyer, Michelle, Huang, Kai, Pietzsch, Colette A., Ge, Yongchao, Pike, Brian L., Regeimbal, James, Simons, Mark P., Termini, Michael S., Vangeti, Sindhu, Marjanovic, Nada, Lizewski, Stephen, Lizewski, Rhonda, George, Mary-Catherine, Nair, Venugopalan D., Smith, Gregory R., Mao, Weiguang, Chikina, Maria, Broder, Christopher C., Laing, Eric D., Bukreyev, Alexander, Sealfon, Stuart C., Letizia, Andrew G.
Publicado 2021

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

por Lizewski, Rhonda A., Sealfon, Rachel S. G., Park, Sang Woo, Smith, Gregory R., Porter, Chad K., Gonzalez-Reiche, Ana S., Ge, Yongchao, Miller, Clare M., Goforth, Carl W., Pincas, Hanna, Termini, Michael S., Ramos, Irene, Nair, Venugopalan D., Lizewski, Stephen E., Alshammary, Hala, Cer, Regina Z., Chen, Hua Wei, George, Mary-Catherine, Arnold, Catherine E., Glang, Lindsay A., Long, Kyle A., Malagon, Francisco, Marayag, Jan J., Nunez, Edgar, Rice, Gregory K., Santa Ana, Ernesto, Schilling, Megan A., Smith, Darci R., Sugiharto, Victor A., Sun, Peifang, van de Guchte, Adriana, Khan, Zenab, Dutta, Jayeeta, Vangeti, Sindhu, Voegtly, Logan J., Weir, Dawn L., Metcalf, C. Jessica E., Troyanskaya, Olga G., Bishop-Lilly, Kimberly A., Grenfell, Bryan T., van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C.
Publicado 2022