SquiggleKit: a toolkit for manipulating nanopore signal data

por Ferguson, James M, Smith, Martin A
Publicado 2019

Featherweight long read alignment using partitioned reference indexes

por Gamaarachchi, Hasindu, Parameswaran, Sri, Smith, Martin A.
Publicado 2019

The COOH-terminal domain of agrin signals via a synaptic receptor in central nervous system neurons

por Hoover, Cameron L., Hilgenberg, Lutz G.W., Smith, Martin A.
Publicado 2003

Widespread purifying selection on RNA structure in mammals

por Smith, Martin A., Gesell, Tanja, Stadler, Peter F., Mattick, John S.
Publicado 2013

DotAligner: identification and clustering of RNA structure motifs

por Smith, Martin A., Seemann, Stefan E., Quek, Xiu Cheng, Mattick, John S.
Publicado 2017

The RNA modification landscape in human disease

por Jonkhout, Nicky, Tran, Julia, Smith, Martin A., Schonrock, Nicole, Mattick, John S., Novoa, Eva Maria
Publicado 2017

NGSANE: a lightweight production informatics framework for high-throughput data analysis

por Buske, Fabian A., French, Hugh J., Smith, Martin A., Clark, Susan J., Bauer, Denis C.
Publicado 2014

GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

por Gamaarachchi, Hasindu, Lam, Chun Wai, Jayatilaka, Gihan, Samarakoon, Hiruna, Simpson, Jared T., Smith, Martin A., Parameswaran, Sri
Publicado 2020

Repeat RNAs associate with replication forks and post-replicative DNA

por Gylling, Helene M., Gonzalez-Aguilera, Cristina, Smith, Martin A., Kaczorowski, Dominik C., Groth, Anja, Lund, Anders H.
Publicado 2020

iPSCs derived from esophageal atresia patients reveal SOX2 dysregulation at the anterior foregut stage

por Raad, Suleen, David, Anu, Sagniez, Melanie, Paré, Bastien, Orfi, Zakaria, Dumont, Nicolas A., Smith, Martin A., Faure, Christophe
Publicado 2022

Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants

por Riaz, Nasir, Leung, Preston, Barton, Kirston, Smith, Martin A., Carswell, Shaun, Bull, Rowena, Lloyd, Andrew R., Rodrigo, Chaturaka
Publicado 2021

Pregnancy-Induced Noncoding RNA (PINC) Associates with Polycomb Repressive Complex 2 and Regulates Mammary Epithelial Differentiation

por Shore, Amy N., Kabotyanski, Elena B., Roarty, Kevin, Smith, Martin A., Zhang, Yiqun, Creighton, Chad J., Dinger, Marcel E., Rosen, Jeffrey M.
Publicado 2012

Molecular barcoding of native RNAs using nanopore sequencing and deep learning

por Smith, Martin A., Ersavas, Tansel, Ferguson, James M., Liu, Huanle, Lucas, Morghan C., Begik, Oguzhan, Bojarski, Lilly, Barton, Kirston, Novoa, Eva Maria
Publicado 2020

Chiral DNA sequences as commutable controls for clinical genomics

por Deveson, Ira W., Madala, Bindu Swapna, Blackburn, James, Barker, Chris, Wong, Ted, Barton, Kirston M., Smith, Martin A., Watkins, D. Neil, Mercer, Tim R.
Publicado 2019

Accurate detection of m(6)A RNA modifications in native RNA sequences

por Liu, Huanle, Begik, Oguzhan, Lucas, Morghan C., Ramirez, Jose Miguel, Mason, Christopher E., Wiener, David, Schwartz, Schraga, Mattick, John S., Smith, Martin A., Novoa, Eva Maria
Publicado 2019

Fast nanopore sequencing data analysis with SLOW5

por Gamaarachchi, Hasindu, Samarakoon, Hiruna, Jenner, Sasha P., Ferguson, James M., Amos, Timothy G., Hammond, Jillian M., Saadat, Hassaan, Smith, Martin A., Parameswaran, Sri, Deveson, Ira W.
Publicado 2022

In Vitro Selection of Remdesivir-Resistant SARS-CoV-2 Demonstrates High Barrier to Resistance

por Checkmahomed, Liva, Carbonneau, Julie, Du Pont, Venice, Riola, Nicholas C., Perry, Jason K., Li, Jiani, Paré, Bastien, Simpson, Shawn M., Smith, Martin A., Porter, Danielle P., Boivin, Guy
Publicado 2022

Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions

por Hardwick, Simon A., Bassett, Samuel D., Kaczorowski, Dominik, Blackburn, James, Barton, Kirston, Bartonicek, Nenad, Carswell, Shaun L., Tilgner, Hagen U., Loy, Clement, Halliday, Glenda, Mercer, Tim R., Smith, Martin A., Mattick, John S.
Publicado 2019

Genomic epidemiology and associated clinical outcomes of a SARS-CoV-2 outbreak in a general adult hospital in Quebec

por Paré, Bastien, Rozendaal, Marieke, Morin, Sacha, Poujol, Raphaël, Mostefai, Fatima, Grenier, Jean-Christophe, Kaufmann, Léa, Xing, Henry, Sanchez, Miguelle, Yechouron, Ariane, Racette, Ronald, Hussin, Julie, Wolf, Guy, Pavlov, Ivan, Smith, Martin A.
Publicado 2021

High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes

por Singh, Mandeep, Al-Eryani, Ghamdan, Carswell, Shaun, Ferguson, James M., Blackburn, James, Barton, Kirston, Roden, Daniel, Luciani, Fabio, Giang Phan, Tri, Junankar, Simon, Jackson, Katherine, Goodnow, Christopher C., Smith, Martin A., Swarbrick, Alexander
Publicado 2019