Determining Enzyme Kinetics for Systems Biology with Nuclear Magnetic Resonance Spectroscopy

por Eicher, Johann J., Snoep, Jacky L., Rohwer, Johann M.
Publicado 2012

Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study

por Horn, Shade, Snoep, Jacky L., van Niekerk , David D.
Publicado 2021

Attractive Models: How to Make the Silicon Cell Relevant and Dynamic

por Westerhoff, Hans V., Bruggeman, Frank, Hofmeyr, Jan-Hendrik S., Snoep, Jacky L.
Publicado 2003

A detailed kinetic model of glycolysis in Plasmodium falciparum-infected red blood cells for antimalarial drug target identification

por van Niekerk, David D., du Toit, Francois, Green, Kathleen, Palm, Danie, Snoep, Jacky L.
Publicado 2023

Fourth-Generation Progestins Inhibit 3β-Hydroxysteroid Dehydrogenase Type 2 and Modulate the Biosynthesis of Endogenous Steroids

por Louw-du Toit, Renate, Perkins, Meghan S., Snoep, Jacky L., Storbeck, Karl-Heinz, Africander, Donita
Publicado 2016

The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico

por Zhang, Yanfei, Kouril, Theresa, Snoep, Jacky L., Siebers, Bettina, Barberis, Matteo, Westerhoff, Hans V.
Publicado 2017

Intercellular communication induces glycolytic synchronization waves between individually oscillating cells

por Mojica-Benavides, Martin, van Niekerk, David D., Mijalkov, Mite, Snoep, Jacky L., Mehlig, Bernhard, Volpe, Giovanni, Goksör, Mattias, Adiels, Caroline B.
Publicado 2021

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

por Le Novère, Nicolas, Bornstein, Benjamin, Broicher, Alexander, Courtot, Mélanie, Donizelli, Marco, Dharuri, Harish, Li, Lu, Sauro, Herbert, Schilstra, Maria, Shapiro, Bruce, Snoep, Jacky L., Hucka, Michael
Publicado 2006

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

por Waltemath, Dagmar, Adams, Richard, Bergmann, Frank T, Hucka, Michael, Kolpakov, Fedor, Miller, Andrew K, Moraru, Ion I, Nickerson, David, Sahle, Sven, Snoep, Jacky L, Le Novère, Nicolas
Publicado 2011

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

por Mulder, Nicola J., Christoffels, Alan, de Oliveira, Tulio, Gamieldien, Junaid, Hazelhurst, Scott, Joubert, Fourie, Kumuthini, Judit, Pillay, Ché S., Snoep, Jacky L., Tastan Bishop, Özlem, Tiffin, Nicki
Publicado 2016

SEEK: a systems biology data and model management platform

por Wolstencroft, Katherine, Owen, Stuart, Krebs, Olga, Nguyen, Quyen, Stanford, Natalie J, Golebiewski, Martin, Weidemann, Andreas, Bittkowski, Meik, An, Lihua, Shockley, David, Snoep, Jacky L., Mueller, Wolfgang, Goble, Carole
Publicado 2015

Design principles of nuclear receptor signaling: how complex networking improves signal transduction

por Kolodkin, Alexey N, Bruggeman, Frank J, Plant, Nick, Moné, Martijn J, Bakker, Barbara M, Campbell, Moray J, van Leeuwen, Johannes P T M, Carlberg, Carsten, Snoep, Jacky L, Westerhoff, Hans V
Publicado 2010

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

por Li, Chen, Donizelli, Marco, Rodriguez, Nicolas, Dharuri, Harish, Endler, Lukas, Chelliah, Vijayalakshmi, Li, Lu, He, Enuo, Henry, Arnaud, Stefan, Melanie I, Snoep, Jacky L, Hucka, Michael, Le Novère, Nicolas, Laibe, Camille
Publicado 2010

Targeting pathogen metabolism without collateral damage to the host

por Haanstra, Jurgen R., Gerding, Albert, Dolga, Amalia M., Sorgdrager, Freek J. H., Buist-Homan, Manon, du Toit, François, Faber, Klaas Nico, Holzhütter, Hermann-Georg, Szöör, Balázs, Matthews, Keith R., Snoep, Jacky L., Westerhoff, Hans V., Bakker, Barbara M.
Publicado 2017

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

por Wolstencroft, Katherine, Krebs, Olga, Snoep, Jacky L., Stanford, Natalie J., Bacall, Finn, Golebiewski, Martin, Kuzyakiv, Rostyk, Nguyen, Quyen, Owen, Stuart, Soiland-Reyes, Stian, Straszewski, Jakub, van Niekerk, David D., Williams, Alan R., Malmström, Lars, Rinn, Bernd, Müller, Wolfgang, Goble, Carole
Publicado 2017

Minimum Information About a Simulation Experiment (MIASE)

por Waltemath, Dagmar, Adams, Richard, Beard, Daniel A., Bergmann, Frank T., Bhalla, Upinder S., Britten, Randall, Chelliah, Vijayalakshmi, Cooling, Michael T., Cooper, Jonathan, Crampin, Edmund J., Garny, Alan, Hoops, Stefan, Hucka, Michael, Hunter, Peter, Klipp, Edda, Laibe, Camille, Miller, Andrew K., Moraru, Ion, Nickerson, David, Nielsen, Poul, Nikolski, Macha, Sahle, Sven, Sauro, Herbert M., Schmidt, Henning, Snoep, Jacky L., Tolle, Dominic, Wolkenhauer, Olaf, Le Novère, Nicolas
Publicado 2011

Harmonizing semantic annotations for computational models in biology

por Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

por McMurry, Julie A., Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K., Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C., Jimenez, Rafael C., Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R., Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L., Soiland-Reyes, Stian, Stanford, Natalie J., Swainston, Neil, Washington, Nicole, Williams, Alan R., Wimalaratne, Sarala M., Winfree, Lilly M., Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J., Haendel, Melissa A., Parkinson, Helen
Publicado 2017