Semantic micro-contributions with decentralized nanopublication services

por Kuhn, Tobias, Taelman, Ruben, Emonet, Vincent, Antonatos, Haris, Soiland-Reyes, Stian, Dumontier, Michel
Publicado 2021

PAV ontology: provenance, authoring and versioning

por Ciccarese, Paolo, Soiland-Reyes, Stian, Belhajjame, Khalid, Gray, Alasdair JG, Goble, Carole, Clark, Tim
Publicado 2013

CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid

por Tan, Wei, Madduri, Ravi, Nenadic, Alexandra, Soiland-Reyes, Stian, Sulakhe, Dinanath, Foster, Ian, Goble, Carole A
Publicado 2010

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

por Khan, Farah Zaib, Soiland-Reyes, Stian, Sinnott, Richard O, Lonie, Andrew, Goble, Carole, Crusoe, Michael R
Publicado 2019

BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows

por Andrio, Pau, Hospital, Adam, Conejero, Javier, Jordá, Luis, Del Pino, Marc, Codo, Laia, Soiland-Reyes, Stian, Goble, Carole, Lezzi, Daniele, Badia, Rosa M., Orozco, Modesto, Gelpi, Josep Ll.
Publicado 2019

Ten simple rules for making a software tool workflow-ready

por Brack, Paul, Crowther, Peter, Soiland-Reyes, Stian, Owen, Stuart, Lowe, Douglas, Williams, Alan R., Groom, Quentin, Dillen, Mathias, Coppens, Frederik, Grüning, Björn, Eguinoa, Ignacio, Ewels, Philip, Goble, Carole
Publicado 2022

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data

por Li, Peter, Castrillo, Juan I, Velarde, Giles, Wassink, Ingo, Soiland-Reyes, Stian, Owen, Stuart, Withers, David, Oinn, Tom, Pocock, Matthew R, Goble, Carole A, Oliver, Stephen G, Kell, Douglas B
Publicado 2008

Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment

por Meurisse, Marjan, Estupiñán-Romero, Francisco, González-Galindo, Javier, Martínez-Lizaga, Natalia, Royo-Sierra, Santiago, Saldner, Simon, Dolanski-Aghamanoukjan, Lorenz, Degelsegger-Marquez, Alexander, Soiland-Reyes, Stian, Van Goethem, Nina, Bernal-Delgado, Enrique
Publicado 2023

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

por Wolstencroft, Katherine, Krebs, Olga, Snoep, Jacky L., Stanford, Natalie J., Bacall, Finn, Golebiewski, Martin, Kuzyakiv, Rostyk, Nguyen, Quyen, Owen, Stuart, Soiland-Reyes, Stian, Straszewski, Jakub, van Niekerk, David D., Williams, Alan R., Malmström, Lars, Rinn, Bernd, Müller, Wolfgang, Goble, Carole
Publicado 2017

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

por Wolstencroft, Katherine, Haines, Robert, Fellows, Donal, Williams, Alan, Withers, David, Owen, Stuart, Soiland-Reyes, Stian, Dunlop, Ian, Nenadic, Aleksandra, Fisher, Paul, Bhagat, Jiten, Belhajjame, Khalid, Bacall, Finn, Hardisty, Alex, Nieva de la Hidalga, Abraham, Balcazar Vargas, Maria P., Sufi, Shoaib, Goble, Carole
Publicado 2013

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

por Bergmann, Frank T, Adams, Richard, Moodie, Stuart, Cooper, Jonathan, Glont, Mihai, Golebiewski, Martin, Hucka, Michael, Laibe, Camille, Miller, Andrew K, Nickerson, David P, Olivier, Brett G, Rodriguez, Nicolas, Sauro, Herbert M, Scharm, Martin, Soiland-Reyes, Stian, Waltemath, Dagmar, Yvon, Florent, Le Novère, Nicolas
Publicado 2014

Structuring research methods and data with the research object model: genomics workflows as a case study

por Hettne, Kristina M, Dharuri, Harish, Zhao, Jun, Wolstencroft, Katherine, Belhajjame, Khalid, Soiland-Reyes, Stian, Mina, Eleni, Thompson, Mark, Cruickshank, Don, Verdes-Montenegro, Lourdes, Garrido, Julian, de Roure, David, Corcho, Oscar, Klyne, Graham, van Schouwen, Reinout, ‘t Hoen, Peter A C, Bechhofer, Sean, Goble, Carole, Roos, Marco
Publicado 2014

Community-driven development for computational biology at Sprints, Hackathons and Codefests

por Möller, Steffen, Afgan, Enis, Banck, Michael, Bonnal, Raoul JP, Booth, Timothy, Chilton, John, Cock, Peter JA, Gumbel, Markus, Harris, Nomi, Holland, Richard, Kalaš, Matúš, Kaján, László, Kibukawa, Eri, Powel, David R, Prins, Pjotr, Quinn, Jacqueline, Sallou, Olivier, Strozzi, Francesco, Seemann, Torsten, Sloggett, Clare, Soiland-Reyes, Stian, Spooner, William, Steinbiss, Sascha, Tille, Andreas, Travis, Anthony J, Guimera, Roman Valls, Katayama, Toshiaki, Chapman, Brad A
Publicado 2014

Perspectives on automated composition of workflows in the life sciences

por Lamprecht, Anna-Lena, Palmblad, Magnus, Ison, Jon, Schwämmle, Veit, Al Manir, Mohammad Sadnan, Altintas, Ilkay, Baker, Christopher J. O., Ben Hadj Amor, Ammar, Capella-Gutierrez, Salvador, Charonyktakis, Paulos, Crusoe, Michael R., Gil, Yolanda, Goble, Carole, Griffin, Timothy J., Groth, Paul, Ienasescu, Hans, Jagtap, Pratik, Kalaš, Matúš, Kasalica, Vedran, Khanteymoori, Alireza, Kuhn, Tobias, Mei, Hailiang, Ménager, Hervé, Möller, Steffen, Richardson, Robin A., Robert, Vincent, Soiland-Reyes, Stian, Stevens, Robert, Szaniszlo, Szoke, Verberne, Suzan, Verhoeven, Aswin, Wolstencroft, Katherine
Publicado 2021

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

por Alterovitz, Gil, Dean, Dennis, Goble, Carole, Crusoe, Michael R., Soiland-Reyes, Stian, Bell, Amanda, Hayes, Anais, Suresh, Anita, Purkayastha, Anjan, King, Charles H., Taylor, Dan, Johanson, Elaine, Thompson, Elaine E., Donaldson, Eric, Morizono, Hiroki, Tsang, Hsinyi, Vora, Jeet K., Goecks, Jeremy, Yao, Jianchao, Almeida, Jonas S., Keeney, Jonathon, Addepalli, KanakaDurga, Krampis, Konstantinos, Smith, Krista M., Guo, Lydia, Walderhaug, Mark, Schito, Marco, Ezewudo, Matthew, Guimera, Nuria, Walsh, Paul, Kahsay, Robel, Gottipati, Srikanth, Rodwell, Timothy C., Bloom, Toby, Lai, Yuching, Simonyan, Vahan, Mazumder, Raja
Publicado 2018

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

por McMurry, Julie A., Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K., Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C., Jimenez, Rafael C., Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R., Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L., Soiland-Reyes, Stian, Stanford, Natalie J., Swainston, Neil, Washington, Nicole, Williams, Alan R., Wimalaratne, Sarala M., Winfree, Lilly M., Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J., Haendel, Melissa A., Parkinson, Helen
Publicado 2017