The projection score - an evaluation criterion for variable subset selection in PCA visualization

por Fontes, Magnus, Soneson, Charlotte
Publicado 2011

A comparison of methods for differential expression analysis of RNA-seq data

por Soneson, Charlotte, Delorenzi, Mauro
Publicado 2013

Towards unified quality verification of synthetic count data with countsimQC

por Soneson, Charlotte, Robinson, Mark D
Publicado 2018

HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

por Weber, Lukas M., Soneson, Charlotte
Publicado 2019

Batch Effect Confounding Leads to Strong Bias in Performance Estimates Obtained by Cross-Validation

por Soneson, Charlotte, Gerster, Sarah, Delorenzi, Mauro
Publicado 2014

Understanding and evaluating ambiguity in single-cell and single-nucleus RNA-sequencing

por He, Dongze, Soneson, Charlotte, Patro, Rob
Publicado 2023

A systematic performance evaluation of clustering methods for single-cell RNA-seq data

por Duò, Angelo, Robinson, Mark D., Soneson, Charlotte
Publicado 2020

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

por Love, Michael I., Soneson, Charlotte, Patro, Rob
Publicado 2018

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

por Soneson, Charlotte, Lilljebjörn, Henrik, Fioretos, Thoas, Fontes, Magnus
Publicado 2010

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

por Soneson, Charlotte, Love, Michael I., Robinson, Mark D.
Publicado 2016

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

por Soneson, Charlotte, Srivastava, Avi, Patro, Rob, Stadler, Michael B.
Publicado 2021

mutscan—a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data

por Soneson, Charlotte, Bendel, Alexandra M., Diss, Guillaume, Stadler, Michael B.
Publicado 2023

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

por Weber, Lukas M., Nowicka, Malgorzata, Soneson, Charlotte, Robinson, Mark D.
Publicado 2019

Genome-wide RNA profiling of long-lasting stem cell-like memory CD8 T cells induced by Yellow Fever vaccination in humans

por Fuertes Marraco, Silvia A., Soneson, Charlotte, Delorenzi, Mauro, Speiser, Daniel E.
Publicado 2015

stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

por Van den Berge, Koen, Soneson, Charlotte, Robinson, Mark D., Clement, Lieven
Publicado 2017

iSEE: Interactive SummarizedExperiment Explorer

por Rue-Albrecht, Kevin, Marini, Federico, Soneson, Charlotte, Lun, Aaron T.L.
Publicado 2018

The shaky foundations of simulating single-cell RNA sequencing data

por Crowell, Helena L., Morillo Leonardo, Sarah X., Soneson, Charlotte, Robinson, Mark D.
Publicado 2023

ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data

por Orjuela, Stephany, Huang, Ruizhu, Hembach, Katharina M., Robinson, Mark D., Soneson, Charlotte
Publicado 2019

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R

por Soneson, Charlotte, Marini, Federico, Geier, Florian, Love, Michael I., Stadler, Michael B.
Publicado 2020

Alevin-fry unlocks rapid, accurate, and memory-frugal quantification of single-cell RNA-seq data

por He, Dongze, Zakeri, Mohsen, Sarkar, Hirak, Soneson, Charlotte, Srivastava, Avi, Patro, Rob
Publicado 2022