PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data

por Song, Dongyuan, Li, Jingyi Jessica
Publicado 2021

scReadSim: a single-cell RNA-seq and ATAC-seq read simulator

por Yan, Guanao, Song, Dongyuan, Li, Jingyi Jessica
Publicado 2023

ClusterDE: a post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping

por Song, Dongyuan, Li, Kexin, Ge, Xinzhou, Li, Jingyi Jessica
Publicado 2023

ClusterDE: a post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping

por Song, Dongyuan, Li, Kexin, Ge, Xinzhou, Li, Jingyi Jessica
Publicado 2023

Statistics or biology: the zero-inflation controversy about scRNA-seq data

por Jiang, Ruochen, Sun, Tianyi, Song, Dongyuan, Li, Jingyi Jessica
Publicado 2022

scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured

por Sun, Tianyi, Song, Dongyuan, Li, Wei Vivian, Li, Jingyi Jessica
Publicado 2021

Publisher Correction: scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured

por Sun, Tianyi, Song, Dongyuan, Li, Wei Vivian, Li, Jingyi Jessica
Publicado 2021

Author Correction: scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured

por Sun, Tianyi, Song, Dongyuan, Li, Wei Vivian, Li, Jingyi Jessica
Publicado 2023

scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling

por Song, Dongyuan, Li, Kexin, Hemminger, Zachary, Wollman, Roy, Li, Jingyi Jessica
Publicado 2021

Clipper: p-value-free FDR control on high-throughput data from two conditions

por Ge, Xinzhou, Chen, Yiling Elaine, Song, Dongyuan, McDermott, MeiLu, Woyshner, Kyla, Manousopoulou, Antigoni, Wang, Ning, Li, Wei, Wang, Leo D., Li, Jingyi Jessica
Publicado 2021