Glycosylator: a Python framework for the rapid modeling of glycans

por Lemmin, Thomas, Soto, Cinque
Publicado 2019

Human-likeness of antibody biologics determined by back-translation and comparison with large antibody variable gene repertoires

por Schmitz, Samuel, Soto, Cinque, Crowe, James E., Meiler, Jens
Publicado 2020

Loop modeling: Sampling, filtering, and scoring

por Soto, Cinque S, Fasnacht, Marc, Zhu, Jiang, Forrest, Lucy, Honig, Barry
Publicado 2008

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations

por Lemmin, Thomas, Soto, Cinque S., Clinthorne, Graham, DeGrado, William F., Dal Peraro, Matteo
Publicado 2013

Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures

por Sevy, Alexander M., Soto, Cinque, Bombardi, Robin G., Meiler, Jens, Crowe, James E.
Publicado 2019

Structure of the Amantadine Binding Site of Influenza M2 Proton Channels In Lipid Bilayers

por Cady, Sarah D., Schmidt-Rohr, Klaus, Wang, Jun, Soto, Cinque S., DeGrado, William F., Hong, Mei
Publicado 2010

Structural basis for broad neutralization of ebolaviruses by an antibody targeting the glycoprotein fusion loop

por Janus, Benjamin M., van Dyk, Nydia, Zhao, Xuelian, Howell, Katie A., Soto, Cinque, Aman, M. Javad, Li, Yuxing, Fuerst, Thomas R., Ofek, Gilad
Publicado 2018

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST

por Soto, Cinque, Finn, Jessica A., Willis, Jordan R., Day, Samuel B., Sinkovits, Robert S., Jones, Taylor, Schmitz, Samuel, Meiler, Jens, Branchizio, Andre, Crowe, James E.
Publicado 2020

Diverse patterns of antibody variable gene repertoire disruption in patients with amyloid light chain (AL) amyloidosis

por Chen, Elaine C., Rubinstein, Samuel, Soto, Cinque, Bombardi, Robin G., Day, Samuel B., Myers, Luke, Zaytsev, Alexey, Majedi, Mahsa, Cornell, R. Frank, Crowe, James E.
Publicado 2020

High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires

por Soto, Cinque, Bombardi, Robin G., Kozhevnikov, Morgan, Sinkovits, Robert S., Chen, Elaine C., Branchizio, Andre, Kose, Nurgun, Day, Samuel B., Pilkinton, Mark, Gujral, Madhusudan, Mallal, Simon, Crowe, James E.
Publicado 2020

Antibodyomics: bioinformatics technologies for understanding B‐cell immunity to HIV‐1

por Kwong, Peter D., Chuang, Gwo‐Yu, DeKosky, Brandon J., Gindin, Tatyana, Georgiev, Ivelin S., Lemmin, Thomas, Schramm, Chaim A., Sheng, Zizhang, Soto, Cinque, Yang, An‐Suei, Mascola, John R., Shapiro, Lawrence
Publicado 2017

Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

por Trück, Johannes, Eugster, Anne, Barennes, Pierre, Tipton, Christopher M, Luning Prak, Eline T, Bagnara, Davide, Soto, Cinque, Sherkow, Jacob S, Payne, Aimee S, Lefranc, Marie-Paule, Farmer, Andrew, Bostick, Magnolia, Mariotti-Ferrandiz, Encarnita
Publicado 2021

Human V(H)1-69 Gene-Encoded Human Monoclonal Antibodies against Staphylococcus aureus IsdB Use at Least Three Distinct Modes of Binding To Inhibit Bacterial Growth and Pathogenesis

por Bennett, Monique R., Dong, Jinhui, Bombardi, Robin G., Soto, Cinque, Parrington, Helen M., Nargi, Rachel S., Schoeder, Clara T., Nagel, Marcus B., Schey, Kevin L., Meiler, Jens, Skaar, Eric P., Crowe, James E.
Publicado 2019

Transplanting Supersites of HIV-1 Vulnerability

por Zhou, Tongqing, Zhu, Jiang, Yang, Yongping, Gorman, Jason, Ofek, Gilad, Srivatsan, Sanjay, Druz, Aliaksandr, Lees, Christopher R., Lu, Gabriel, Soto, Cinque, Stuckey, Jonathan, Burton, Dennis R., Koff, Wayne C., Connors, Mark, Kwon, Peter D.
Publicado 2014

Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals

por Bozhanova, Nina G., Flyak, Andrew I., Brown, Benjamin P., Ruiz, Stormy E., Salas, Jordan, Rho, Semi, Bombardi, Robin G., Myers, Luke, Soto, Cinque, Bailey, Justin R., Crowe, James E., Bjorkman, Pamela J., Meiler, Jens
Publicado 2022

Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8

por Soto, Cinque, Ofek, Gilad, Joyce, M. Gordon, Zhang, Baoshan, McKee, Krisha, Longo, Nancy S., Yang, Yongping, Huang, Jinghe, Parks, Robert, Eudailey, Joshua, Lloyd, Krissey E., Alam, S. Munir, Haynes, Barton F., Mullikin, James C., Connors, Mark, Mascola, John R., Shapiro, Lawrence, Kwong, Peter D.
Publicado 2016

A Cysteine Zipper Stabilizes a Pre-Fusion F Glycoprotein Vaccine for Respiratory Syncytial Virus

por Stewart-Jones, Guillaume B. E., Thomas, Paul V., Chen, Man, Druz, Aliaksandr, Joyce, M. Gordon, Kong, Wing-Pui, Sastry, Mallika, Soto, Cinque, Yang, Yongping, Zhang, Baoshan, Chen, Lei, Chuang, Gwo-Yu, Georgiev, Ivelin S., McLellan, Jason S., Srivatsan, Sanjay, Zhou, Tongqing, Baxa, Ulrich, Mascola, John R., Graham, Barney S., Kwong, Peter D.
Publicado 2015

Rapid discovery of diverse neutralizing SARS-CoV-2 antibodies from large-scale synthetic phage libraries

por Yuan, Tom Z., Garg, Pankaj, Wang, Linya, Willis, Jordan R., Kwan, Eric, Hernandez, Ana G Lujan, Tuscano, Emily, Sever, Emily N., Keane, Erica, Soto, Cinque, Mucker, Eric M., Fouch, Mallorie E., Davidson, Edgar, Doranz, Benjamin J., Kailasan, Shweta, Aman, M. Javad, Li, Haoyang, Hooper, Jay W., Saphire, Erica Ollmann, Crowe, James E., Liu, Qiang, Axelrod, Fumiko, Sato, Aaron K.
Publicado 2021

Structure and immune recognition of trimeric prefusion HIV-1 Env

por Pancera, Marie, Zhou, Tongqing, Druz, Aliaksandr, Georgiev, Ivelin S., Soto, Cinque, Gorman, Jason, Huang, Jinghe, Acharya, Priyamvada, Chuang, Gwo-Yu, Ofek, Gilad, Stewart-Jones, Guillaume B. E., Stuckey, Jonathan, Bailer, Robert T., Joyce, M. Gordon, Louder, Mark K., Tumba, Nancy, Yang, Yongping, Zhang, Baoshan, Cohen, Myron S., Haynes, Barton F., Mascola, John R., Morris, Lynn, Munro, James B., Blanchard, Scott C., Mothes, Walther, Connors, Mark, Kwong, Peter D.
Publicado 2014

Iterative structure-based improvement of a respiratory syncytial virus fusion glycoprotein vaccine

por Joyce, M. Gordon, Zhang, Baoshan, Ou, Li, Chen, Man, Chuang, Gwo-Yu, Druz, Aliaksandr, Kong, Wing-Pui, Lai, Yen-Ting, Rundlet, Emily J., Tsybovsky, Yaroslav, Yang, Yongping, Georgiev, Ivelin S., Guttman, Miklos, Lees, Christopher R., Pancera, Marie, Sastry, Mallika, Soto, Cinque, Stewart-Jones, Guillaume B.E., Thomas, Paul V., Van Galen, Joseph G., Baxa, Ulrich, Lee, Kelly K., Mascola, John R., Graham, Barney S., Kwong, Peter D.
Publicado 2016