Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing

por Soto, Daniela C., Shew, Colin, Mastoras, Mira, Schmidt, Joshua M., Sahasrabudhe, Ruta, Kaya, Gulhan, Andrés, Aida M., Dennis, Megan Y.
Publicado 2020

Diverse Molecular Mechanisms Contribute to Differential Expression of Human Duplicated Genes

por Shew, Colin J, Carmona-Mora, Paulina, Soto, Daniela C, Mastoras, Mira, Roberts, Elizabeth, Rosas, Joseph, Jagannathan, Dhriti, Kaya, Gulhan, O’Geen, Henriette, Dennis, Megan Y
Publicado 2021

FixItFelix: improving genomic analysis by fixing reference errors

por Behera, Sairam, LeFaive, Jonathon, Orchard, Peter, Mahmoud, Medhat, Paulin, Luis F., Farek, Jesse, Soto, Daniela C., Parker, Stephen C. J., Smith, Albert V., Dennis, Megan Y., Zook, Justin M., Sedlazeck, Fritz J.
Publicado 2023

Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism

por Zhu, Yihui, Gomez, J. Antonio, Laufer, Benjamin I., Mordaunt, Charles E., Mouat, Julia S., Soto, Daniela C., Dennis, Megan Y., Benke, Kelly S., Bakulski, Kelly M., Dou, John, Marathe, Ria, Jianu, Julia M., Williams, Logan A., Gutierrez Fugón, Orangel J., Walker, Cheryl K., Ozonoff, Sally, Daniels, Jason, Grosvenor, Luke P., Volk, Heather E., Feinberg, Jason I., Fallin, M. Daniele, Hertz-Picciotto, Irva, Schmidt, Rebecca J., Yasui, Dag H., LaSalle, Janine M.
Publicado 2022

Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans

por Vidal, Elena A., Moyano, Tomás C., Bustos, Bernabé I., Pérez-Palma, Eduardo, Moraga, Carol, Riveras, Eleodoro, Montecinos, Alejandro, Azócar, Lorena, Soto, Daniela C., Vidal, Mabel, Di Genova, Alex, Puschel, Klaus, Nürnberg, Peter, Buch, Stephan, Hampe, Jochen, Allende, Miguel L., Cambiazo, Verónica, González, Mauricio, Hodar, Christian, Montecino, Martín, Muñoz-Espinoza, Claudia, Orellana, Ariel, Reyes-Jara, Angélica, Travisany, Dante, Vizoso, Paula, Moraga, Mauricio, Eyheramendy, Susana, Maass, Alejandro, De Ferrari, Giancarlo V., Miquel, Juan Francisco, Gutiérrez, Rodrigo A.
Publicado 2019

Telomere-to-telomere assembly of a complete human X chromosome

por Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.
Publicado 2020

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

por Walker, Kimberly, Kalra, Divya, Lowdon, Rebecca, Chen, Guangyi, Molik, David, Soto, Daniela C., Dabbaghie, Fawaz, Khleifat, Ahmad Al, Mahmoud, Medhat, Paulin, Luis F, Raza, Muhammad Sohail, Pfeifer, Susanne P., Agustinho, Daniel Paiva, Aliyev, Elbay, Avdeyev, Pavel, Barrozo, Enrico R., Behera, Sairam, Billingsley, Kimberley, Chong, Li Chuin, Choubey, Deepak, De Coster, Wouter, Fu, Yilei, Gener, Alejandro R., Hefferon, Timothy, Henke, David Morgan, Höps, Wolfram, Illarionova, Anastasia, Jochum, Michael D., Jose, Maria, Kesharwani, Rupesh K., Kolora, Sree Rohit Raj, Kubica, Jędrzej, Lakra, Priya, Lattimer, Damaris, Liew, Chia-Sin, Lo, Bai-Wei, Lo, Chunhsuan, Lötter, Anneri, Majidian, Sina, Mendem, Suresh Kumar, Mondal, Rajarshi, Ohmiya, Hiroko, Parvin, Nasrin, Peralta, Carolina, Poon, Chi-Lam, Prabhakaran, Ramanandan, Saitou, Marie, Sammi, Aditi, Sanio, Philippe, Sapoval, Nicolae, Syed, Najeeb, Treangen, Todd, Wang, Gaojianyong, Xu, Tiancheng, Yang, Jianzhi, Zhang, Shangzhe, Zhou, Weiyu, Sedlazeck, Fritz J, Busby, Ben
Publicado 2022

The complete sequence of a human genome*

por Nurk, Sergey, Koren, Sergey, Rhie, Arang, Rautiainen, Mikko, Bzikadze, Andrey V., Mikheenko, Alla, Vollger, Mitchell R., Altemose, Nicolas, Uralsky, Lev, Gershman, Ariel, Aganezov, Sergey, Hoyt, Savannah J., Diekhans, Mark, Logsdon, Glennis A., Alonge, Michael, Antonarakis, Stylianos E., Borchers, Matthew, Bouffard, Gerard G., Brooks, Shelise Y., Caldas, Gina V., Chen, Nae-Chyun, Cheng, Haoyu, Chin, Chen-Shan, Chow, William, de Lima, Leonardo G., Dishuck, Philip C., Durbin, Richard, Dvorkina, Tatiana, Fiddes, Ian T., Formenti, Giulio, Fulton, Robert S., Fungtammasan, Arkarachai, Garrison, Erik, Grady, Patrick G.S., Graves-Lindsay, Tina A., Hall, Ira M., Hansen, Nancy F., Hartley, Gabrielle A., Haukness, Marina, Howe, Kerstin, Hunkapiller, Michael W., Jain, Chirag, Jain, Miten, Jarvis, Erich D., Kerpedjiev, Peter, Kirsche, Melanie, Kolmogorov, Mikhail, Korlach, Jonas, Kremitzki, Milinn, Li, Heng, Maduro, Valerie V., Marschall, Tobias, McCartney, Ann M., McDaniel, Jennifer, Miller, Danny E., Mullikin, James C., Myers, Eugene W., Olson, Nathan D., Paten, Benedict, Peluso, Paul, Pevzner, Pavel A., Porubsky, David, Potapova, Tamara, Rogaev, Evgeny I., Rosenfeld, Jeffrey A., Salzberg, Steven L., Schneider, Valerie A., Sedlazeck, Fritz J., Shafin, Kishwar, Shew, Colin J., Shumate, Alaina, Sims, Ying, Smit, Arian F. A., Soto, Daniela C., Sović, Ivan, Storer, Jessica M., Streets, Aaron, Sullivan, Beth A., Thibaud-Nissen, Françoise, Torrance, James, Wagner, Justin, Walenz, Brian P., Wenger, Aaron, Wood, Jonathan M. D., Xiao, Chunlin, Yan, Stephanie M., Young, Alice C., Zarate, Samantha, Surti, Urvashi, McCoy, Rajiv C., Dennis, Megan Y., Alexandrov, Ivan A., Gerton, Jennifer L., O’Neill, Rachel J., Timp, Winston, Zook, Justin M., Schatz, Michael C., Eichler, Evan E., Miga, Karen H., Phillippy, Adam M.
Publicado 2022