Phylogenetic Analysis and Characterization of the Complete Hepatitis E Virus Genome (Zoonotic Genotype 3) in Swine Samples from Mexico

por Sotomayor-González, Alicia, Trujillo-Ortega, María E., Taboada-Ramírez, Blanca I., Sandoval-Jaime, Carlos, Sarmiento-Silva, Rosa E.
Publicado 2018

Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel

por Gu, Wei, Deng, Xianding, Reyes, Kevin, Hsu, Elaine, Wang, Candace, Sotomayor-Gonzalez, Alicia, Federman, Scot, Bushnell, Brian, Miller, Steve, Chiu, Charles Y
Publicado 2020

Isolation and characterization of porcine epidemic diarrhea virus associated with the 2014 disease outbreak in Mexico: case report

por Trujillo-Ortega, María Elena, Beltrán-Figueroa, Rolando, García-Hernández, Montserrat Elemi, Juárez-Ramírez, Mireya, Sotomayor-González, Alicia, Hernández-Villegas, Erika N., Becerra-Hernández, José F., Sarmiento-Silva, Rosa Elena
Publicado 2016

Longitudinal comparison of the developing gut virome in infants and their mothers

por Walters, William A., Granados, Andrea C., Ley, Catherine, Federman, Scot, Stryke, Doug, Santos, Yale, Haggerty, Thomas, Sotomayor-Gonzalez, Alicia, Servellita, Venice, Ley, Ruth E., Parsonnet, Julie, Chiu, Charles Y.
Publicado 2023

Contact-Tracing Outcomes Among Household Contacts of Fully Vaccinated Coronavirus Disease 2019 (COVID-19) Patients: San Francisco, California, 29 January–2 July 2021

por Sachdev, Darpun D, Chew Ng, Rilene, Sankaran, Madeline, Ernst, Alexandra, Hernandez, Katherine T, Servellita, Venice, Sotomayor-Gonzalez, Alicia, Stoltey, Juliet, Cohen, Stephanie E, Nguyen, Trang Quyen, Chiu, Charles Y, Philip, Susan
Publicado 2021

Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay

por Broughton, James P., Deng, Xianding, Yu, Guixia, Fasching, Clare L., Singh, Jasmeet, Streithorst, Jessica, Granados, Andrea, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Hsu, Elaine, Gu, Wei, Miller, Steve, Pan, Chao-Yang, Guevara, Hugo, Wadford, Debra A., Chen, Janice S., Chiu, Charles Y.
Publicado 2020

COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme

por Fasching, Clare L., Servellita, Venice, McKay, Bridget, Nagesh, Vaishnavi, Broughton, James P., Sotomayor-Gonzalez, Alicia, Wang, Baolin, Brazer, Noah, Reyes, Kevin, Streithorst, Jessica, Deraney, Rachel N., Stanfield, Emma, Hendriks, Carley G., Fung, Becky, Miller, Steve, Ching, Jesus, Chen, Janice S., Chiu, Charles Y.
Publicado 2022

CRISPR-Cas12–based detection of SARS-CoV-2

por Broughton, James P., Deng, Xianding, Yu, Guixia, Fasching, Clare L., Servellita, Venice, Singh, Jasmeet, Miao, Xin, Streithorst, Jessica, Granados, Andrea, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Hsu, Elaine, Gu, Wei, Miller, Steve, Pan, Chao-Yang, Guevara, Hugo, Wadford, Debra A., Chen, Janice S., Chiu, Charles Y.
Publicado 2020

The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters

por Carroll, Timothy, Fox, Douglas, van Doremalen, Neeltje, Ball, Erin, Morris, Mary Kate, Sotomayor-Gonzalez, Alicia, Servellita, Venice, Rustagi, Arjun, Yinda, Claude Kwe, Fritts, Linda, Port, Julia Rebecca, Ma, Zhong-Min, Holbrook, Myndi, Schulz, Jonathan, Blish, Catherine A., Hanson, Carl, Chiu, Charles Y., Munster, Vincent, Stanley, Sarah, Miller, Christopher J.
Publicado 2021

The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters

por Carroll, Timothy, Fox, Douglas, van Doremalen, Neeltje, Ball, Erin, Morris, Mary Kate, Sotomayor-Gonzalez, Alicia, Servellita, Venice, Rustagi, Arjun, Yinda, Claude Kwe, Fritts, Linda, Port, Julia Rebecca, Ma, Zhong-Min, Holbrook, Myndi G., Schulz, Jonathan, Blish, Catherine A., Hanson, Carl, Chiu, Charles Y., Munster, Vincent, Stanley, Sarah, Miller, Christopher J.
Publicado 2022

Neutralizing immunity in vaccine breakthrough infections from the SARS-CoV-2 Omicron and Delta variants

por Servellita, Venice, Syed, Abdullah M., Morris, Mary Kate, Brazer, Noah, Saldhi, Prachi, Garcia-Knight, Miguel, Sreekumar, Bharath, Khalid, Mir M., Ciling, Alison, Chen, Pei-Yi, Kumar, G. Renuka, Gliwa, Amelia S., Nguyen, Jenny, Sotomayor-Gonzalez, Alicia, Zhang, Yueyuan, Frias, Edwin, Prostko, John, Hackett, John, Andino, Raul, Wadford, Debra A., Hanson, Carl, Doudna, Jennifer, Ott, Melanie, Chiu, Charles Y.
Publicado 2022

Nucleic acid biomarkers of immune response and cell and tissue damage in children with COVID-19 and MIS-C

por Loy, Conor J., Sotomayor-Gonzalez, Alicia, Servellita, Venice, Nguyen, Jenny, Lenz, Joan, Bhattacharya, Sanchita, Williams, Meagan E., Cheng, Alexandre P., Bliss, Andrew, Saldhi, Prachi, Brazer, Noah, Streithorst, Jessica, Suslovic, William, Hsieh, Charlotte J., Bahar, Burak, Wood, Nathan, Foresythe, Abiodun, Gliwa, Amelia, Bhakta, Kushmita, Perez, Maria A., Hussaini, Laila, Anderson, Evan J., Chahroudi, Ann, Delaney, Meghan, Butte, Atul J., DeBiasi, Roberta L., Rostad, Christina A., De Vlaminck, Iwijn, Chiu, Charles Y.
Publicado 2023

Previous exposure to Spike-providing parental strains confers neutralizing immunity to XBB lineage and other SARS-CoV-2 recombinants in the context of vaccination

por Suryawanshi, Rahul K., Taha, Taha Y., McCavitt-Malvido, Maria, Silva, Ines, Khalid, Mir M., Syed, Abdullah M., Chen, Irene P., Saldhi, Prachi, Sreekumar, Bharath, Montano, Mauricio, Foresythe, Kafaya, Tabata, Takako, Kumar, G. Renuka, Sotomayor-Gonzalez, Alicia, Servellita, Venice, Gliwa, Amelia, Nguyen, Jenny, Kojima, Noah, Arellanor, Teresa, Bussanich, Aallyah, Hess, Victoria, Shacreaw, Maria, Lopez, Lauren, Brobeck, Matthew, Turner, Fred, Wang, Yuzhu, Ghazarian, Sydney, Davis, Gregg, Rodriguez, Diviana, Doudna, Jennifer, Spraggon, Lee, Chiu, Charles Y., Ott, Melanie
Publicado 2023

A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood

por Ng, Dianna L., Granados, Andrea C., Santos, Yale A., Servellita, Venice, Goldgof, Gregory M., Meydan, Cem, Sotomayor-Gonzalez, Alicia, Levine, Andrew G., Balcerek, Joanna, Han, Lucy M., Akagi, Naomi, Truong, Kent, Neumann, Neil M., Nguyen, David N., Bapat, Sagar P., Cheng, Jing, Martin, Claudia Sanchez-San, Federman, Scot, Foox, Jonathan, Gopez, Allan, Li, Tony, Chan, Ray, Chu, Cynthia S., Wabl, Chiara A., Gliwa, Amelia S., Reyes, Kevin, Pan, Chao-Yang, Guevara, Hugo, Wadford, Debra, Miller, Steve, Mason, Christopher E., Chiu, Charles Y.
Publicado 2021

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

por Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G., Faria, Nuno, Wang, Candace, Yu, Guixia, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G., MacCannell, Duncan, Paden, Clinton R., Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T., Mase, Sundari, Kasirye, Olivia, Park, Maggie, Chan, Curtis, Yu, Alexander T., Chai, Shua J., Villarino, Elsa, Bonin, Brandon, Wadford, Debra A., Chiu, Charles Y.
Publicado 2020

Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination

por Suryawanshi, Rahul K., Chen, Irene P., Ma, Tongcui, Syed, Abdullah M., Brazer, Noah, Saldhi, Prachi, Simoneau, Camille R., Ciling, Alison, Khalid, Mir M., Sreekumar, Bharath, Chen, Pei-Yi, Kumar, G. Renuka, Montano, Mauricio, Gascon, Ronne, Tsou, Chia-Lin, Garcia-Knight, Miguel A., Sotomayor-Gonzalez, Alicia, Servellita, Venice, Gliwa, Amelia, Nguyen, Jenny, Silva, Ines, Milbes, Bilal, Kojima, Noah, Hess, Victoria, Shacreaw, Maria, Lopez, Lauren, Brobeck, Matthew, Turner, Fred, Soveg, Frank W., George, Ashley F., Fang, Xiaohui, Maishan, Mazharul, Matthay, Michael, Morris, Mary Kate, Wadford, Debra, Hanson, Carl, Greene, Warner C., Andino, Raul, Spraggon, Lee, Roan, Nadia R., Chiu, Charles Y., Doudna, Jennifer A., Ott, Melanie
Publicado 2022

SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood from the San Francisco Bay Area

por Ng, Dianna L., Goldgof, Gregory M., Shy, Brian R., Levine, Andrew G., Balcerek, Joanna, Bapat, Sagar P., Prostko, John, Rodgers, Mary, Coller, Kelly, Pearce, Sandy, Franz, Sergej, Du, Li, Stone, Mars, Pillai, Satish K., Sotomayor-Gonzalez, Alicia, Servellita, Venice, Martin, Claudia Sanchez San, Granados, Andrea, Glasner, Dustin R., Han, Lucy M., Truong, Kent, Akagi, Naomi, Nguyen, David N., Neumann, Neil M., Qazi, Daniel, Hsu, Elaine, Gu, Wei, Santos, Yale A., Custer, Brian, Green, Valerie, Williamson, Phillip, Hills, Nancy K., Lu, Chuanyi M., Whitman, Jeffrey D., Stramer, Susan, Wang, Candace, Reyes, Kevin, Hakim, Jill M.C., Sujishi, Kirk, Alazzeh, Fariba, Pham, Lori, Oon, Ching-Ying, Miller, Steve, Kurtz, Theodore, Hackett, John, Simmons, Graham, Busch, Michael P., Chiu, Charles Y.
Publicado 2020

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

por Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G., Faria, Nuno, Wang, Candace, Yu, Guixia, Bushnell, Brian, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G., MacCannell, Duncan, Paden, Clinton R., Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T., Mase, Sundari, Kasirye, Olivia, Park, Maggie, Masinde, Godfred, Chan, Curtis, Yu, Alexander T., Chai, Shua J., Villarino, Elsa, Bonin, Brandon, Wadford, Debra A., Chiu, Charles Y.
Publicado 2020

Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation

por Deng, Xianding, Garcia-Knight, Miguel A, Khalid, Mir M., Servellita, Venice, Wang, Candace, Morris, Mary Kate, Sotomayor-González, Alicia, Glasner, Dustin R, Reyes, Kevin R, Gliwa, Amelia S., Reddy, Nikitha P., Martin, Claudia Sanchez San, Federman, Scot, Cheng, Jing, Balcerek, Joanna, Taylor, Jordan, Streithorst, Jessica A, Miller, Steve, Kumar, G. Renuka, Sreekumar, Bharath, Chen, Pei-Yi, Schulze-Gahmen, Ursula, Taha, Taha Y., Hayashi, Jennifer, Simoneau, Camille R., McMahon, Sarah, Lidsky, Peter V., Xiao, Yinghong, Hemarajata, Peera, Green, Nicole M., Espinosa, Alex, Kath, Chantha, Haw, Monica, Bell, John, Hacker, Jill K., Hanson, Carl, Wadford, Debra A., Anaya, Carlos, Ferguson, Donna, Lareau, Liana F., Frankino, Phillip A., Shivram, Haridha, Wyman, Stacia K., Ott, Melanie, Andino, Raul, Chiu, Charles Y.
Publicado 2021

Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant

por Deng, Xianding, Garcia-Knight, Miguel A., Khalid, Mir M., Servellita, Venice, Wang, Candace, Morris, Mary Kate, Sotomayor-González, Alicia, Glasner, Dustin R., Reyes, Kevin R., Gliwa, Amelia S., Reddy, Nikitha P., Sanchez San Martin, Claudia, Federman, Scot, Cheng, Jing, Balcerek, Joanna, Taylor, Jordan, Streithorst, Jessica A., Miller, Steve, Sreekumar, Bharath, Chen, Pei-Yi, Schulze-Gahmen, Ursula, Taha, Taha Y., Hayashi, Jennifer M., Simoneau, Camille R., Kumar, G. Renuka, McMahon, Sarah, Lidsky, Peter V., Xiao, Yinghong, Hemarajata, Peera, Green, Nicole M., Espinosa, Alex, Kath, Chantha, Haw, Monica, Bell, John, Hacker, Jill K., Hanson, Carl, Wadford, Debra A., Anaya, Carlos, Ferguson, Donna, Frankino, Phillip A., Shivram, Haridha, Lareau, Liana F., Wyman, Stacia K., Ott, Melanie, Andino, Raul, Chiu, Charles Y.
Publicado 2021