Relative Model Fit Does Not Predict Topological Accuracy in Single-Gene Protein Phylogenetics

por Spielman, Stephanie J
Publicado 2020

Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies

por Spielman, Stephanie J., Wilke, Claus O.
Publicado 2015

Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty

por Spielman, Stephanie J., Miraglia, Molly L.
Publicado 2021

Relative evolutionary rate inference in HyPhy with LEISR

por Spielman, Stephanie J., Kosakovsky Pond, Sergei L.
Publicado 2018

Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model

por Spielman, Stephanie J, Kosakovsky Pond, Sergei L
Publicado 2018

Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors

por Spielman, Stephanie J., Kumar, Keerthana, Wilke, Claus O.
Publicado 2015

Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein

por Jackson, Eleisha L., Spielman, Stephanie J., Wilke, Claus O.
Publicado 2017

Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak

por Meyer, Austin G., Spielman, Stephanie J., Bedford, Trevor, Wilke, Claus O.
Publicado 2015

Measuring evolutionary rates of proteins in a structural context

por Sydykova, Dariya K., Jack, Benjamin R., Spielman, Stephanie J., Wilke, Claus O.
Publicado 2018

The expanding network of mineral chemistry throughout earth history reveals global shifts in crustal chemistry during the Proterozoic

por Moore, Eli K., Golden, Josh J., Morrison, Shaunna M., Hao, Jihua, Spielman, Stephanie J.
Publicado 2022

Mineral Element Insiders and Outliers Play Crucial Roles in Biological Evolution

por Moore, Eli K., Martinez, Daniella L., Srivastava, Naman, Morrison, Shaunna M., Spielman, Stephanie J.
Publicado 2022

Maximum Allowed Solvent Accessibilites of Residues in Proteins

por Tien, Matthew Z., Meyer, Austin G., Sydykova, Dariya K., Spielman, Stephanie J., Wilke, Claus O.
Publicado 2013

Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2

por Kadlecova, Zuzana, Spielman, Stephanie J., Loerke, Dinah, Mohanakrishnan, Aparna, Reed, Dana Kim, Schmid, Sandra L.
Publicado 2017

Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature

por Maddamsetti, Rohan, Johnson, Daniel T., Spielman, Stephanie J., Petrie, Katherine L., Marks, Debora S., Meyer, Justin R.
Publicado 2018

OpenPBTA: The Open Pediatric Brain Tumor Atlas

por Shapiro, Joshua A., Gaonkar, Krutika S., Spielman, Stephanie J., Savonen, Candace L., Bethell, Chante J., Jin, Run, Rathi, Komal S., Zhu, Yuankun, Egolf, Laura E., Farrow, Bailey K., Miller, Daniel P., Yang, Yang, Koganti, Tejaswi, Noureen, Nighat, Koptyra, Mateusz P., Duong, Nhat, Santi, Mariarita, Kim, Jung, Robins, Shannon, Storm, Phillip B., Mack, Stephen C., Lilly, Jena V., Xie, Hongbo M., Jain, Payal, Raman, Pichai, Rood, Brian R., Lulla, Rishi R., Nazarian, Javad, Kraya, Adam A., Vaksman, Zalman, Heath, Allison P., Kline, Cassie, Scolaro, Laura, Viaene, Angela N., Huang, Xiaoyan, Way, Gregory P., Foltz, Steven M., Zhang, Bo, Poetsch, Anna R., Mueller, Sabine, Ennis, Brian M., Prados, Michael, Diskin, Sharon J., Zheng, Siyuan, Guo, Yiran, Kannan, Shrivats, Waanders, Angela J., Margol, Ashley S., Kim, Meen Chul, Hanson, Derek, Van Kuren, Nicholas, Wong, Jessica, Kaufman, Rebecca S., Coleman, Noel, Blackden, Christopher, Cole, Kristina A., Mason, Jennifer L., Madsen, Peter J., Koschmann, Carl J., Stewart, Douglas R., Wafula, Eric, Brown, Miguel A., Resnick, Adam C., Greene, Casey S., Rokita, Jo Lynne, Taroni, Jaclyn N.
Publicado 2023