Spurious transcription factor binding: Non-functional or genetically redundant?

por Spivakov, Mikhail
Publicado 2014

Transcriptional enhancers and their communication with gene promoters

por Ray-Jones, Helen, Spivakov, Mikhail
Publicado 2021

A Comparison of Peak Callers Used for DNase-Seq Data

por Koohy, Hashem, Down, Thomas A., Spivakov, Mikhail, Hubbard, Tim
Publicado 2014

Chicdiff: a computational pipeline for detecting differential chromosomal interactions in Capture Hi-C data

por Cairns, Jonathan, Orchard, William R, Malysheva, Valeriya, Spivakov, Mikhail
Publicado 2019

Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters

por Mitchelmore, Joanna, Grinberg, Nastasiya F, Wallace, Chris, Spivakov, Mikhail
Publicado 2020

Prioritisation of Candidate Genes Underpinning COVID-19 Host Genetic Traits Based on High-Resolution 3D Chromosomal Topology

por Thiecke, Michiel J., Yang, Emma J., Burren, Oliver S., Ray-Jones, Helen, Spivakov, Mikhail
Publicado 2021

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

por Pancaldi, Vera, Carrillo-de-Santa-Pau, Enrique, Javierre, Biola Maria, Juan, David, Fraser, Peter, Spivakov, Mikhail, Valencia, Alfonso, Rico, Daniel
Publicado 2016

Analysis of variation at transcription factor binding sites in Drosophila and humans

por Spivakov, Mikhail, Akhtar, Junaid, Kheradpour, Pouya, Beal, Kathryn, Girardot, Charles, Koscielny, Gautier, Herrero, Javier, Kellis, Manolis, Furlong, Eileen EM, Birney, Ewan
Publicado 2012

The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells

por Jørgensen, Helle F, Azuara, Véronique, Amoils, Shannon, Spivakov, Mikhail, Terry, Anna, Nesterova, Tatyana, Cobb, Bradley S, Ramsahoye, Bernard, Merkenschlager, Matthias, Fisher, Amanda G
Publicado 2007

A new phosphate-starvation response in fission yeast requires the endocytic function of myosin I

por Petrini, Edoardo, Baillet, Victoire, Cridge, Jake, Hogan, Cassandra J., Guillaume, Cindy, Ke, Huiling, Brandetti, Elisa, Walker, Simon, Koohy, Hashem, Spivakov, Mikhail, Varga-Weisz, Patrick
Publicado 2015

Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels

por Dobnikar, Lina, Taylor, Annabel L., Chappell, Joel, Oldach, Phoebe, Harman, Jennifer L., Oerton, Erin, Dzierzak, Elaine, Bennett, Martin R., Spivakov, Mikhail, Jørgensen, Helle F.
Publicado 2018

Publisher Correction: Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels

por Dobnikar, Lina, Taylor, Annabel L., Chappell, Joel, Oldach, Phoebe, Harman, Jennifer L., Oerton, Erin, Dzierzak, Elaine, Bennett, Martin R., Spivakov, Mikhail, Jørgensen, Helle F.
Publicado 2018

Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish

por Spivakov, Mikhail, Auer, Thomas O., Peravali, Ravindra, Dunham, Ian, Dolle, Dirk, Fujiyama, Asao, Toyoda, Atsushi, Aizu, Tomoyuki, Minakuchi, Yohei, Loosli, Felix, Naruse, Kiyoshi, Birney, Ewan, Wittbrodt, Joachim
Publicado 2014

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

por Cairns, Jonathan, Freire-Pritchett, Paula, Wingett, Steven W., Várnai, Csilla, Dimond, Andrew, Plagnol, Vincent, Zerbino, Daniel, Schoenfelder, Stefan, Javierre, Biola-Maria, Osborne, Cameron, Fraser, Peter, Spivakov, Mikhail
Publicado 2016

Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers

por Thiecke, Michiel J., Wutz, Gordana, Muhar, Matthias, Tang, Wen, Bevan, Stephen, Malysheva, Valeriya, Stocsits, Roman, Neumann, Tobias, Zuber, Johannes, Fraser, Peter, Schoenfelder, Stefan, Peters, Jan-Michael, Spivakov, Mikhail
Publicado 2020

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells

por Freire-Pritchett, Paula, Schoenfelder, Stefan, Várnai, Csilla, Wingett, Steven W, Cairns, Jonathan, Collier, Amanda J, García-Vílchez, Raquel, Furlan-Magaril, Mayra, Osborne, Cameron S, Fraser, Peter, Rugg-Gunn, Peter J, Spivakov, Mikhail
Publicado 2017

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

por Bolland, Daniel J., Koohy, Hashem, Wood, Andrew L., Matheson, Louise S., Krueger, Felix, Stubbington, Michael J.T., Baizan-Edge, Amanda, Chovanec, Peter, Stubbs, Bryony A., Tabbada, Kristina, Andrews, Simon R., Spivakov, Mikhail, Corcoran, Anne E.
Publicado 2016

Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks

por Choy, Mun-Kit, Javierre, Biola M., Williams, Simon G., Baross, Stephanie L., Liu, Yingjuan, Wingett, Steven W., Akbarov, Artur, Wallace, Chris, Freire-Pritchett, Paula, Rugg-Gunn, Peter J., Spivakov, Mikhail, Fraser, Peter, Keavney, Bernard D.
Publicado 2018

Author Correction: Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks

por Choy, Mun-Kit, Javierre, Biola M., Williams, Simon G., Baross, Stephanie L., Liu, Yingjuan, Wingett, Steven W., Akbarov, Artur, Wallace, Chris, Freire-Pritchett, Paula, Rugg-Gunn, Peter J., Spivakov, Mikhail, Fraser, Peter, Keavney, Bernard D.
Publicado 2018

Cellular mechanisms of oligoclonal vascular smooth muscle cell expansion in cardiovascular disease

por Worssam, Matt D, Lambert, Jordi, Oc, Sebnem, Taylor, James C K, Taylor, Annabel L, Dobnikar, Lina, Chappell, Joel, Harman, Jennifer L, Figg, Nichola L, Finigan, Alison, Foote, Kirsty, Uryga, Anna K, Bennett, Martin R, Spivakov, Mikhail, Jørgensen, Helle F
Publicado 2022