Biodegradation of thiocyanate by a native groundwater microbial consortium

af Spurr, Liam P., Watts, Mathew P., Gan, Han M., Moreau, John W.
Udgivet 2019

Emergency Department Preparedness to Care for Sexual Assault Survivors: A Nationwide Study

af Chalmers, Kristen, Hollender, Meredith, Spurr, Liam, Parameswaran, Ramya, Dussault, Nicole, Farnan, Jeanne, Oyola, Sonia, Carter, Keme
Udgivet 2023

GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions

af Słowiński, Piotr, Li, Muzi, Restrepo, Paula, Alomran, Nawaf, Spurr, Liam F., Miller, Christian, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Udgivet 2020

Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data

af N. M., Prashant, Liu, Hongyu, Bousounis, Pavlos, Spurr, Liam, Alomran, Nawaf, Ibeawuchi, Helen, Sein, Justin, Reece-Stremtan, Dacian, Horvath, Anelia
Udgivet 2020

scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

af Liu, Hongyu, Prashant, N. M., Spurr, Liam F., Bousounis, Pavlos, Alomran, Nawaf, Ibeawuchi, Helen, Sein, Justin, Słowiński, Piotr, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Udgivet 2021

Systematic pan-cancer analysis of somatic allele frequency

af Spurr, Liam, Li, Muzi, Alomran, Nawaf, Zhang, Qianqian, Restrepo, Paula, Movassagh, Mercedeh, Trenkov, Chris, Tunnessen, Nerissa, Apanasovich, Tatiyana, Crandall, Keith A., Edwards, Nathan, Horvath, Anelia
Udgivet 2018

Overexpressed somatic alleles are enriched in functional elements in Breast Cancer

af Restrepo, Paula, Movassagh, Mercedeh, Alomran, Nawaf, Miller, Christian, Li, Muzi, Trenkov, Chris, Manchev, Yulian, Bahl, Sonali, Warnken, Stephanie, Spurr, Liam, Apanasovich, Tatiyana, Crandall, Keith, Edwards, Nathan, Horvath, Anelia
Udgivet 2017

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data

af Spurr, Liam F, Alomran, Nawaf, Bousounis, Pavlos, Reece-Stremtan, Dacian, Prashant, N M, Liu, Hongyu, Słowiński, Piotr, Li, Muzi, Zhang, Qianqian, Sein, Justin, Asher, Gabriel, Crandall, Keith A, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Udgivet 2020

Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 deletion syndrome

af Maynard, Thomas M, Horvath, Anelia, P Bernot, James, Karpinski, Beverly A, Tavares, Andre L P, Shah, Ankita, Zheng, Qianqian, Spurr, Liam, Olender, Jacqueline, Moody, Sally A, Fraser, Claire M, LaMantia, Anthony-S, Lee, Norman H
Udgivet 2020

Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 deletion syndrome

af Maynard, Thomas M, Horvath, Anelia, Bernot, James P, Karpinski, Beverly A, Tavares, Andre L P, Shah, Ankita, Zheng, Qianqian, Spurr, Liam, Olender, Jacqueline, Moody, Sally A, Fraser, Claire M, LaMantia, Anthony-S, Lee, Norman H
Udgivet 2020

A proliferative subtype of colorectal liver metastases exhibits hypersensitivity to cytotoxic chemotherapy

af Spurr, Liam F., Martinez, Carlos A., Katipally, Rohan R., Iyer, Soumya C., Pugh, Sian A., Bridgewater, John A., Primrose, John N., Domingo, Enric, Maughan, Timothy S., D’Angelica, Michael I., Talamonti, Mark, Posner, Mitchell C., Connell, Philip P., Weichselbaum, Ralph R., Pitroda, Sean P.
Udgivet 2022

Discovery and Features of an Alkylating Signature in Colorectal Cancer

af Gurjao, Carino, Zhong, Rong, Haruki, Koichiro, Li, Yvonne Y., Spurr, Liam F., Lee-Six, Henry, Reardon, Brendan, Ugai, Tomotaka, Zhang, Xuehong, Cherniack, Andrew D., Song, Mingyang, Van Allen, Eliezer M., Meyerhardt, Jeffrey A., Nowak, Jonathan A., Giovannucci, Edward L., Fuchs, Charles S., Wu, Kana, Ogino, Shuji, Giannakis, Marios
Udgivet 2021

CDKN2A loss-of-function predicts immunotherapy resistance in non-small cell lung cancer

af Gutiontov, Stanley I., Turchan, William Tyler, Spurr, Liam F., Rouhani, Sherin J., Chervin, Carolina Soto, Steinhardt, George, Lager, Angela M., Wanjari, Pankhuri, Malik, Renuka, Connell, Philip P., Chmura, Steven J., Juloori, Aditya, Hoffman, Philip C., Ferguson, Mark K., Donington, Jessica S., Patel, Jyoti D., Vokes, Everett E., Weichselbaum, Ralph R., Bestvina, Christine M., Segal, Jeremy P., Pitroda, Sean P.
Udgivet 2021

Synthetic Lethal Interaction between the ESCRT Paralog Enzymes VPS4A and VPS4B in Cancers Harboring Loss of Chromosome 18q or 16q

af Neggers, Jasper E., Paolella, Brenton R., Asfaw, Adhana, Rothberg, Michael V., Skipper, Thomas A., Yang, Annan, Kalekar, Radha L., Krill-Burger, John M., Dharia, Neekesh V., Kugener, Guillaume, Kalfon, Jérémie, Yuan, Chen, Dumont, Nancy, Gonzalez, Alfredo, Abdusamad, Mai, Li, Yvonne Y., Spurr, Liam F., Wu, Westley W., Durbin, Adam D., Wolpin, Brian M., Piccioni, Federica, Root, David E., Boehm, Jesse S., Cherniack, Andrew D., Tsherniak, Aviad, Hong, Andrew L., Hahn, William C., Stegmaier, Kimberly, Golub, Todd R., Vazquez, Francisca, Aguirre, Andrew J.
Udgivet 2020

Synthetic Lethal Interaction between the ESCRT Paralog Enzymes VPS4A and VPS4B in Cancers Harboring Loss of Chromosome 18q or 16q

af Neggers, Jasper E., Paolella, Brenton R., Asfaw, Adhana, Rothberg, Michael V., Skipper, Thomas A., Yang, Annan, Kalekar, Radha L., Krill-Burger, John M., Dharia, Neekesh V., Kugener, Guillaume, Kalfon, Jérémie, Yuan, Chen, Dumont, Nancy, Gonzalez, Alfredo, Abdusamad, Mai, Li, Yvonne Y., Spurr, Liam F., Wu, Westley W., Durbin, Adam D., Wolpin, Brain M., Piccioni, Federica, Root, David E., Boehm, Jesse S., Cherniack, Andrew D., Tsherniak, Aviad, Hong, Andrew L., Hahn, William C., Stegmaier, Kimberly, Golub, Todd R., Vazquez, Francisca, Aguirre, Andrew J.
Udgivet 2021

Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer

af Raghavan, Srivatsan, Winter, Peter S., Navia, Andrew W., Williams, Hannah L., DenAdel, Alan, Lowder, Kristen E., Galvez-Reyes, Jennyfer, Kalekar, Radha L., Mulugeta, Nolawit, Kapner, Kevin S., Raghavan, Manisha S., Borah, Ashir A., Liu, Nuo, Väyrynen, Sara A., Costa, Andressa Dias, Ng, Raymond W.S., Wang, Junning, Hill, Emma K., Ragon, Dorisanne Y., Brais, Lauren K., Jaeger, Alex M., Spurr, Liam F., Li, Yvonne Y., Cherniack, Andrew D., Booker, Matthew A., Cohen, Elizabeth F., Tolstorukov, Michael Y., Wakiro, Isaac, Rotem, Asaf, Johnson, Bruce E., McFarland, James M., Sicinska, Ewa T., Jacks, Tyler E., Sullivan, Ryan J., Shapiro, Geoffrey I., Clancy, Thomas E., Perez, Kimberly, Rubinson, Douglas A., Ng, Kimmie, Cleary, James M., Crawford, Lorin, Manalis, Scott R., Nowak, Jonathan A., Wolpin, Brian M., Hahn, William C., Aguirre, Andrew J., Shalek, Alex K.
Udgivet 2021

Mechanisms and therapeutic implications of hypermutation in gliomas

af Touat, Mehdi, Li, Yvonne Y., Boynton, Adam N., Spurr, Liam F., Iorgulescu, J. Bryan, Bohrson, Craig L., Cortes-Ciriano, Isidro, Birzu, Cristina, Geduldig, Jack E., Pelton, Kristine, Lim-Fat, Mary Jane, Pal, Sangita, Ferrer-Luna, Ruben, Ramkissoon, Shakti H., Dubois, Frank, Bellamy, Charlotte, Currimjee, Naomi, Bonardi, Juliana, Qian, Kenin, Ho, Patricia, Malinowski, Seth, Taquet, Leon, Jones, Robert, Shetty, Aniket, Chow, Kin-Hoe, Sharaf, Radwa, Pavlick, Dean, Albacker, Lee A., Younan, Nadia, Baldini, Capucine, Verreault, Maïté, Giry, Marine, Guillerm, Erell, Ammari, Samy, Beuvon, Frédéric, Mokhtari, Karima, Alentorn, Agusti, Dehais, Caroline, Houillier, Caroline, Laigle-Donadey, Florence, Psimaras, Dimitri, Lee, Eudocia Q., Nayak, Lakshmi, McFaline-Figueroa, J. Ricardo, Carpentier, Alexandre, Cornu, Philippe, Capelle, Laurent, Mathon, Bertrand, Barnholtz-Sloan, Jill S., Chakravarti, Arnab, Bi, Wenya Linda, Chiocca, E. Antonio, Fehnel, Katie Pricola, Alexandrescu, Sanda, Chi, Susan, Haas-Kogan, Daphne, Batchelor, Tracy T., Frampton, Garrett M., Alexander, Brian M., Huang, Raymond Y., Ligon, Azra H., Coulet, Florence, Delattre, Jean-Yves, Hoang-Xuan, Khê, Meredith, David M., Santagata, Sandro, Duval, Alex, Sanson, Marc, Cherniack, Andrew, Wen, Patrick Y., Reardon, David A., Marabelle, Aurélien, Park, Peter J., Idbaih, Ahmed, Beroukhim, Rameen, Bandopadhayay, Pratiti, Bielle, Franck, Ligon, Keith L.
Udgivet 2020