MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples

por Behr, Jonas, Kahles, André, Zhong, Yi, Sreedharan, Vipin T., Drewe, Philipp, Rätsch, Gunnar
Publicado 2013

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints

por Zhong, Yi, Karaletsos, Theofanis, Drewe, Philipp, Sreedharan, Vipin T, Kuo, David, Singh, Kamini, Wendel, Hans-Guido, Rätsch, Gunnar
Publicado 2017

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis

por Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Publicado 2014

Oqtans: a multifunctional workbench for RNA-seq data analysis

por Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Publicado 2014

Cohesin Rings Devoid of Scc3 and Pds5 Maintain Their Stable Association with the DNA

por Kulemzina, Irina, Schumacher, Martin R., Verma, Vikash, Reiter, Jochen, Metzler, Janina, Failla, Antonio Virgilio, Lanz, Christa, Sreedharan, Vipin T., Rätsch, Gunnar, Ivanov, Dmitri
Publicado 2012

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data

por Schultheiss, Sebastian J, Jean, Géraldine, Behr, Jonas, Bohnert, Regina, Drewe, Philipp, Görnitz, Nico, Kahles, André, Mudrakarta, Pramod, Sreedharan, Vipin T, Zeller, Georg, Rätsch, Gunnar
Publicado 2011

Prediction of ultra-potent shRNAs with a sequential classification algorithm

por Pelossof, Raphael, Fairchild, Lauren, Huang, Chun-Hao, Widmer, Christian, Sreedharan, Vipin T., Sinha, Nishi, Lai, Dan-Yu, Guan, Yuanzhe, Premsrirut, Prem K., Tschaharganeh, Darjus F., Hoffmann, Thomas, Thapar, Vishal, Xiang, Qing, Garippa, Ralph J., Rätsch, Gunnar, Zuber, Johannes, Lowe, Scott W., Leslie, Christina S., Fellmann, Christof
Publicado 2017

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

por Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rátsch, Gunnar, Mott, Richard
Publicado 2011