Whole-genome sequencing cluster analysis reveals complex healthcare-associated COVID-19 dynamics

por Rader, Theodore, Snyder, Graham, Harrison, Lee, Srinivasa, Vatsala Rangachar, Griffith, Marissa, Pless, Lora, Chung, Ashley
Publicado 2023

Research and implementation of a whole-genome sequencing surveillance system for outbreak detection

por Sundermann, Alexander, Griffith, Marissa, Srinivasa, Vatsala Rangachar, Waggle, Kady, Saul, Melissa, Ayres, Ashley, Snyder, Graham, Marsh, Jane, Harrison, Lee
Publicado 2022

Empirically derived sequence similarity thresholds to study the genomic epidemiology of plasmids shared among healthcare-associated bacterial pathogens

por Evans, Daniel, Sundermann, Alexander, Griffith, Marissa, Rangachar Srinivasa, Vatsala, Mustapha, Mustapha, Chen, Jieshi, Dubrawski, Artur, Cooper, Vaughn, Harrison, Lee, Van Tyne, Daria
Publicado 2023

Real-time whole-genome sequencing surveillance for outbreak detection and intervention

por Sundermann, Alexander, Griffith, Marissa, Srinivasa, Vatsala Rangachar, Waggle, Kady, Marsh, Jane, Tyne, Daria Van, Ayres, Ashley, Pless, Lora, Snyder, Graham, Harrison, Lee
Publicado 2023

Convergent Evolution of Antibiotic Tolerance in Patients with Persistent Methicillin-Resistant Staphylococcus aureus Bacteremia

por Elgrail, Mitra M., Chen, Edwin, Shaffer, Marla G., Srinivasa, Vatsala, Griffith, Marissa P., Mustapha, Mustapha M., Shields, Ryan K., Van Tyne, Daria, Culyba, Matthew J.
Publicado 2022

Two artificial tears outbreak-associated cases of XDR Pseudomonas aeruginosa detected through whole genome sequencing-based surveillance

por Sundermann, Alexander J., Srinivasa, Vatsala Rangachar, Mills, Emma G., Griffith, Marissa P., Waggle, Kady D., Ayres, Ashley M., Pless, Lora, Snyder, Graham M., Harrison, Lee H., Van Tyne, Daria
Publicado 2023

Predictive model for severe COVID-19 using SARS-CoV-2 whole-genome sequencing and electronic health record data, March 2020-May 2021

por Zhu, Lei, Marsh, Jane W., Griffith, Marissa P., Collins, Kevin, Srinivasa, Vatsala, Waggle, Kady, Van Tyne, Daria, Snyder, Graham M., Phan, Tung, Wells, Alan, Marroquin, Oscar C., Harrison, Lee H.
Publicado 2022

Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

por Waggle, Kady D., Griffith, Marissa P., Zhu, Lei, Cooper, Vaughn S., Snyder, Daniel J., Srinivasa, Vatsala, Phan, Tung, Wells, Alan, Snyder, Graham M., Van Tyne, Daria, Harrison, Lee H., Marsh, Jane W.
Publicado 2022

Genomic Diversity of Hospital-Acquired Infections Revealed through Prospective Whole-Genome Sequencing-Based Surveillance

por Mustapha, Mustapha M., Srinivasa, Vatsala R., Griffith, Marissa P., Cho, Shu-Ting, Evans, Daniel R., Waggle, Kady, Ezeonwuka, Chinelo, Snyder, Daniel J., Marsh, Jane W., Harrison, Lee H., Cooper, Vaughn S., Van Tyne, Daria
Publicado 2022

Genomic Epidemiologic Investigation of a Multispecies Hospital Outbreak of NDM-5-Producing Enterobacterales Infections

por Raabe, Nathan J., Valek, Abby L., Griffith, Marissa P., Mills, Emma, Waggle, Kady, Srinivasa, Vatsala Rangachar, Ayres, Ashley M., Bradford, Claire, Creager, Hannah, Pless, Lora L., Sundermann, Alexander J., Van Tyne, Daria, Snyder, Graham M., Harrison, Lee H.
Publicado 2023