Nuclear oligo hashing improves differential analysis of single-cell RNA-seq

por Kim, Hyeon-Jin, Booth, Greg, Saunders, Lauren, Srivatsan, Sanjay, McFaline-Figueroa, José L., Trapnell, Cole
Publicado 2022

Hydrodynamic delivery of plasmid DNA encoding human FcγR-Ig dimers blocks immune-complex mediated inflammation in mice

por Shashidharamurthy, Rangaiah, Machiah, Deepa, Bozeman, Erica N., Srivatsan, Sanjay, Patel, Jaina, Cho, Alice, Jacob, Joshy, Selvaraj, Periasamy
Publicado 2011

High-Capacity Sample Multiplexing for Single Cell Chromatin Accessibility Profiling

por Booth, Gregory T., Daza, Riza M., Srivatsan, Sanjay R., McFaline-Figueroa, José L., Gladden, Rula Green, Furlan, Scott N., Shendure, Jay, Trapnell, Cole
Publicado 2023

High-capacity sample multiplexing for single cell chromatin accessibility profiling

por Booth, Gregory T., Daza, Riza M., Srivatsan, Sanjay R., McFaline-Figueroa, José L., Gladden, Rula Green, Mullen, Andrew C., Furlan, Scott N., Shendure, Jay, Trapnell, Cole
Publicado 2023

Embryo-scale reverse genetics at single-cell resolution

por Saunders, Lauren M., Srivatsan, Sanjay R., Duran, Madeleine, Dorrity, Michael W., Ewing, Brent, Linbo, Tor H., Shendure, Jay, Raible, David W., Moens, Cecilia B., Kimelman, David, Trapnell, Cole
Publicado 2023

High‐throughput, microscope‐based sorting to dissect cellular heterogeneity

por Hasle, Nicholas, Cooke, Anthony, Srivatsan, Sanjay, Huang, Heather, Stephany, Jason J, Krieger, Zachary, Jackson, Dana, Tang, Weiliang, Pendyala, Sriram, Monnat, Raymond J, Trapnell, Cole, Hatch, Emily M, Fowler, Douglas M
Publicado 2020

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation

por Bonora, Giancarlo, Ramani, Vijay, Singh, Ritambhara, Fang, He, Jackson, Dana L., Srivatsan, Sanjay, Qiu, Ruolan, Lee, Choli, Trapnell, Cole, Shendure, Jay, Duan, Zhijun, Deng, Xinxian, Noble, William S., Disteche, Christine M.
Publicado 2021

Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy

por McFaline-Figueroa, José L., Srivatsan, Sanjay, Hill, Andrew J., Gasperini, Molly, Jackson, Dana L., Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G., Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J., Shendure, Jay, Trapnell, Cole
Publicado 2023

Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection

por Nemeth, Johannes, Olson, Gregory S., Rothchild, Alissa C., Jahn, Ana N., Mai, Dat, Duffy, Fergal J., Delahaye, Jared L., Srivatsan, Sanjay, Plumlee, Courtney R., Urdahl, Kevin B., Gold, Elizabeth S., Aderem, Alan, Diercks, Alan H.
Publicado 2020

Multipotent progenitors and hematopoietic stem cells arise independently from hemogenic endothelium in the mouse embryo

por Dignum, Tessa, Varnum-Finney, Barbara, Srivatsan, Sanjay R., Dozono, Stacey, Waltner, Olivia, Heck, Adam M., Ishida, Takashi, Nourigat-McKay, Cynthia, Jackson, Dana L., Rafii, Shahin, Trapnell, Cole, Bernstein, Irwin D., Hadland, Brandon
Publicado 2021

Transplanting Supersites of HIV-1 Vulnerability

por Zhou, Tongqing, Zhu, Jiang, Yang, Yongping, Gorman, Jason, Ofek, Gilad, Srivatsan, Sanjay, Druz, Aliaksandr, Lees, Christopher R., Lu, Gabriel, Soto, Cinque, Stuckey, Jonathan, Burton, Dennis R., Koff, Wayne C., Connors, Mark, Kwon, Peter D.
Publicado 2014

Systematic reconstruction of cellular trajectories across mouse embryogenesis

por Qiu, Chengxiang, Cao, Junyue, Martin, Beth K., Li, Tony, Welsh, Ian C., Srivatsan, Sanjay, Huang, Xingfan, Calderon, Diego, Noble, William Stafford, Disteche, Christine M., Murray, Stephen A., Spielmann, Malte, Moens, Cecilia B., Trapnell, Cole, Shendure, Jay
Publicado 2022

Genome sequencing in a case of Niemann–Pick type C

por Dougherty, Max, Lazar, John, Klein, Jason C., Diaz, Karina, Gobillot, Theodore, Grunblatt, Eli, Hasle, Nicholas, Lawrence, Daniel, Maurano, Megan, Nelson, Maria, Olson, Gregory, Srivatsan, Sanjay, Shendure, Jay, Keene, C. Dirk, Bird, Thomas, Horwitz, Marshall S., Marshall, Desiree A.
Publicado 2016

Predicting cellular responses to complex perturbations in high‐throughput screens

por Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J
Publicado 2023

A Cysteine Zipper Stabilizes a Pre-Fusion F Glycoprotein Vaccine for Respiratory Syncytial Virus

por Stewart-Jones, Guillaume B. E., Thomas, Paul V., Chen, Man, Druz, Aliaksandr, Joyce, M. Gordon, Kong, Wing-Pui, Sastry, Mallika, Soto, Cinque, Yang, Yongping, Zhang, Baoshan, Chen, Lei, Chuang, Gwo-Yu, Georgiev, Ivelin S., McLellan, Jason S., Srivatsan, Sanjay, Zhou, Tongqing, Baxa, Ulrich, Mascola, John R., Graham, Barney S., Kwong, Peter D.
Publicado 2015

Pulmonary osteoclast-like cells in silica induced pulmonary fibrosis

por Hasegawa, Yoshihiro, Franks, Jennifer M., Tanaka, Yusuke, Uehara, Yasuaki, Read, David F., Williams, Claire, Srivatsan, Sanjay, Pitstick, Lori B., Nikolaidis, Nikolaos M., Shaver, Ciara M., Wu, Huixing, Gardner, Jason C., Osterburg, Andrew R., Yu, Jane J., Kopras, Elizabeth J., Teitelbaum, Steven L., Wikenheiser-Brokamp, Kathryn A., Trapnell, Cole, McCormack, Francis X.
Publicado 2023

A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup

por Qiu, Chengxiang, Martin, Beth K., Welsh, Ian C., Daza, Riza M., Le, Truc-Mai, Huang, Xingfan, Nichols, Eva K., Taylor, Megan L., Fulton, Olivia, O’Day, Diana R., Gomes, Anne Roshella, Ilcisin, Saskia, Srivatsan, Sanjay, Deng, Xinxian, Disteche, Christine M., Noble, William Stafford, Hamazaki, Nobuhiko, Moens, Cecilia B., Kimelman, David, Cao, Junyue, Schier, Alexander F., Spielmann, Malte, Murray, Stephen A., Trapnell, Cole, Shendure, Jay
Publicado 2023

Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies

por Edman, Natasha I, Redler, Rachel L, Phal, Ashish, Schlichthaerle, Thomas, Srivatsan, Sanjay R, Etemadi, Ali, An, Seong J, Favor, Andrew, Ehnes, Devon, Li, Zhe, Praetorius, Florian, Gordon, Max, Yang, Wei, Coventry, Brian, Hicks, Derrick R., Cao, Longxing, Bethel, Neville, Heine, Piper, Murray, Analisa, Gerben, Stacey, Carter, Lauren, Miranda, Marcos, Negahdari, Babak, Lee, Sangwon, Trapnell, Cole, Stewart, Lance, Ekiert, Damian C., Schlessinger, Joseph, Shendure, Jay, Bhabha, Gira, Ruohola-Baker, Hannele, Baker, David
Publicado 2023

SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing

por Srivatsan, Sanjay, Heidl, Sarah, Pfau, Brian, Martin, Beth K., Han, Peter D., Zhong, Weizhi, van Raay, Katrina, McDermot, Evan, Opsahl, Jordan, Gamboa, Luis, Smith, Nahum, Truong, Melissa, Cho, Shari, Barrow, Kaitlyn A., Rich, Lucille M., Stone, Jeremy, Wolf, Caitlin R., McCulloch, Denise J., Kim, Ashley E., Brandstetter, Elisabeth, Sohlberg, Sarah L., Ilcisin, Misja, Geyer, Rachel E., Chen, Wei, Gehring, Jase, Kosuri, Sriram, Bedford, Trevor, Rieder, Mark J., Nickerson, Deborah A., Chu, Helen Y., Konnick, Eric Q., Debley, Jason S., Shendure, Jay, Lockwood, Christina M., Starita, Lea M.
Publicado 2021

Single-cell, whole-embryo phenotyping of mammalian developmental disorders

por Huang, Xingfan, Henck, Jana, Qiu, Chengxiang, Sreenivasan, Varun K. A., Balachandran, Saranya, Amarie, Oana V., Hrabě de Angelis, Martin, Behncke, Rose Yinghan, Chan, Wing-Lee, Despang, Alexandra, Dickel, Diane E., Duran, Madeleine, Feuchtinger, Annette, Fuchs, Helmut, Gailus-Durner, Valerie, Haag, Natja, Hägerling, Rene, Hansmeier, Nils, Hennig, Friederike, Marshall, Cooper, Rajderkar, Sudha, Ringel, Alessa, Robson, Michael, Saunders, Lauren M., da Silva-Buttkus, Patricia, Spielmann, Nadine, Srivatsan, Sanjay R., Ulferts, Sascha, Wittler, Lars, Zhu, Yiwen, Kalscheuer, Vera M., Ibrahim, Daniel M., Kurth, Ingo, Kornak, Uwe, Visel, Axel, Pennacchio, Len A., Beier, David R., Trapnell, Cole, Cao, Junyue, Shendure, Jay, Spielmann, Malte
Publicado 2023