Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats

por Gileta, Alexander F., Gao, Jianjun, Chitre, Apurva S., Bimschleger, Hannah V., St. Pierre, Celine L., Gopalakrishnan, Shyam, Palmer, Abraham A.
Publicado 2020

Genetic, epigenetic, and environmental mechanisms govern allele-specific gene expression

por St. Pierre, Celine L., Macias-Velasco, Juan F., Wayhart, Jessica P., Yin, Li, Semenkovich, Clay F., Lawson, Heather A.
Publicado 2022

Genome-Wide Association Study in Two Cohorts from a Multi-generational Mouse Advanced Intercross Line Highlights the Difficulty of Replication Due to Study-Specific Heterogeneity

por Zhou, Xinzhu, St. Pierre, Celine L., Gonzales, Natalia M., Zou, Jennifer, Cheng, Riyan, Chitre, Apurva S., Sokoloff, Greta, Palmer, Abraham A.
Publicado 2020

Dietary iron interacts with genetic background to influence glucose homeostasis

por Miranda, Mario A., St Pierre, Celine L., Macias-Velasco, Juan F., Nguyen, Huyen Anh, Schmidt, Heather, Agnello, Lucian T., Wayhart, Jessica P., Lawson, Heather A.
Publicado 2019

Brown Adipose Expansion and Remission of Glycemic Dysfunction in Obese SM/J Mice

por Carson, Caryn, Macias-Velasco, Juan F., Gunawardana, Subhadra, Miranda, Mario A., Oyama, Sakura, St. Pierre, Celine L., Schmidt, Heather, Wayhart, Jessica P., Lawson, Heather A.
Publicado 2020

Spontaneous restoration of functional β‐cell mass in obese SM/J mice

por Miranda, Mario A., Carson, Caryn, St. Pierre, Celine L., Macias‐Velasco, Juan F., Hughes, Jing W., Kunzmann, Marcus, Schmidt, Heather, Wayhart, Jessica P., Lawson, Heather A.
Publicado 2020

SNPs, short tandem repeats, and structural variants are responsible for differential gene expression across C57BL/6 and C57BL/10 substrains

por Mortazavi, Milad, Ren, Yangsu, Saini, Shubham, Antaki, Danny, St. Pierre, Celine L., Williams, April, Sohni, Abhishek, Wilkinson, Miles F., Gymrek, Melissa, Sebat, Jonathan, Palmer, Abraham A.
Publicado 2022

Genome wide association analysis in a mouse advanced intercross line

por Gonzales, Natalia M., Seo, Jungkyun, Hernandez Cordero, Ana I., St. Pierre, Celine L., Gregory, Jennifer S., Distler, Margaret G., Abney, Mark, Canzar, Stefan, Lionikas, Arimantas, Palmer, Abraham A.
Publicado 2018

Parent-of-origin effects propagate through networks to shape metabolic traits

por Macias-Velasco, Juan F, St Pierre, Celine L, Wayhart, Jessica P, Yin, Li, Spears, Larry, Miranda, Mario A, Carson, Caryn, Funai, Katsuhiko, Cheverud, James M, Semenkovich, Clay F, Lawson, Heather A
Publicado 2022

Genome-wide association study finds multiple loci associated with intraocular pressure in HS rats

por Fowler, Samuel, Wang, Tengfei, Munro, Daniel, Kumar, Aman, Chitre, Apurva S., Hollingsworth, T. J., Garcia Martinez, Angel, St. Pierre, Celine L., Bimschleger, Hannah, Gao, Jianjun, Cheng, Riyan, Mohammadi, Pejman, Chen, Hao, Palmer, Abraham A., Polesskaya, Oksana, Jablonski, Monica M.
Publicado 2023

Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies

por Gileta, Alexander F., Fitzpatrick, Christopher J., Chitre, Apurva S., St. Pierre, Celine L., Joyce, Elizabeth V., Maguire, Rachael J., McLeod, Africa M., Gonzales, Natalia M., Williams, April E., Morrow, Jonathan D., Robinson, Terry E., Flagel, Shelly B., Palmer, Abraham A.
Publicado 2022

Automated quantitative trait locus analysis (AutoQTL)

por Freda, Philip J., Ghosh, Attri, Zhang, Elizabeth, Luo, Tianhao, Chitre, Apurva S., Polesskaya, Oksana, St. Pierre, Celine L., Gao, Jianjun, Martin, Connor D., Chen, Hao, Garcia-Martinez, Angel G., Wang, Tengfei, Han, Wenyan, Ishiwari, Keita, Meyer, Paul, Lamparelli, Alexander, King, Christopher P., Palmer, Abraham A., Li, Ruowang, Moore, Jason H.
Publicado 2023

Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks

por Wright, Sarah N., Leger, Brittany S., Rosenthal, Sara Brin, Liu, Sophie N., Jia, Tongqiu, Chitre, Apurva S., Polesskaya, Oksana, Holl, Katie, Gao, Jianjun, Cheng, Riyan, Martinez, Angel Garcia, George, Anthony, Gileta, Alexander F., Han, Wenyan, Netzley, Alesa H., King, Christopher P., Lamparelli, Alexander, Martin, Connor, St. Pierre, Celine L., Wang, Tengfei, Bimschleger, Hannah, Richards, Jerry, Ishiwari, Keita, Chen, Hao, Flagel, Shelly B., Meyer, Paul, Robinson, Terry E., Woods, Leah C. Solberg, Kreisberg, Jason F., Ideker, Trey, Palmer, Abraham A.
Publicado 2023

Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research

por Sigmon, John Sebastian, Blanchard, Matthew W., Baric, Ralph S., Bell, Timothy A., Brennan, Jennifer, Brockmann, Gudrun A., Burks, A. Wesley, Calabrese, J. Mauro, Caron, Kathleen M., Cheney, Richard E., Ciavatta, Dominic, Conlon, Frank, Darr, David B., Faber, James, Franklin, Craig, Gershon, Timothy R., Gralinski, Lisa, Gu, Bin, Gaines, Christiann H., Hagan, Robert S., Heimsath, Ernest G., Heise, Mark T., Hock, Pablo, Ideraabdullah, Folami, Jennette, J. Charles, Kafri, Tal, Kashfeen, Anwica, Kulis, Mike, Kumar, Vivek, Linnertz, Colton, Livraghi-Butrico, Alessandra, Lloyd, K. C. Kent, Lutz, Cathleen, Lynch, Rachel M., Magnuson, Terry, Matsushima, Glenn K., McMullan, Rachel, Miller, Darla R., Mohlke, Karen L., Moy, Sheryl S., Murphy, Caroline E. Y., Najarian, Maya, O’Brien, Lori, Palmer, Abraham A., Philpot, Benjamin D., Randell, Scott H., Reinholdt, Laura, Ren, Yuyu, Rockwood, Steve, Rogala, Allison R., Saraswatula, Avani, Sassetti, Christopher M., Schisler, Jonathan C., Schoenrock, Sarah A., Shaw, Ginger D., Shorter, John R., Smith, Clare M., St. Pierre, Celine L., Tarantino, Lisa M., Threadgill, David W., Valdar, William, Vilen, Barbara J., Wardwell, Keegan, Whitmire, Jason K., Williams, Lucy, Zylka, Mark J., Ferris, Martin T., McMillan, Leonard, Manuel de Villena, Fernando Pardo
Publicado 2020