Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain Picochlorum soloecismus

por Gonzalez-Esquer, C. Raul, Twary, Scott N., Hovde, Blake T., Starkenburg, Shawn R.
Publicado 2018

Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information

por Roth, Cullen, Venu, Vrinda, Job, Vanessa, Lubbers, Nicholas, Sanbonmatsu, Karissa Y., Steadman, Christina R., Starkenburg, Shawn R.
Publicado 2023

Polymer modelling accurately predicts three-dimensional chromosome reorganization with a seasonal coronavirus infection

por Singhal, Ankush, Roth, Cullen, Micheva-Viteva, Sofiya, Lappala, Anna, Lee, Jeannie T., Starkenburg, Shawn R., Sanbonmatsu, Karissa Y.
Publicado 2023

Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776

por Ohan, J. A., Hovde, B. T., Zhang, X. L., Davenport, K. W., Chertkov, O., Han, C., Twary, S. N., Starkenburg, S. R.
Publicado 2019

Metabolism of Scenedesmus obliquus cultivated with raw plant substrates

por Schambach, Jenna Y., Kruse, Colin P. S., Kitin, Peter, Mays, Wittney, Hunt, Christopher G., Starkenburg, Shawn R., Barry, Amanda N.
Publicado 2022

Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius

por Hovde, Blake T., Daligault, Hajnalka E., Hanschen, Erik R., Kunde, Yuliya A., Johnson, Matthew B., Starkenburg, Shawn R., Johnson, Shannon L.
Publicado 2019

Nonclassical autophagy activation pathways are essential for production of infectious Influenza A virus in vitro

por Bell, Tisza A. S., Velappan, Nileena, Gleasner, Cheryl D., Xie, Gang, Starkenburg, Shawn R., Waldo, Geoffrey, Banerjee, Shounak, Micheva‐Viteva, Sofiya N.
Publicado 2022

Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z

por Starkenburg, S. R., Polle, J. E. W., Hovde, B., Daligault, H. E., Davenport, K. W., Huang, A., Neofotis, P., McKie-Krisberg, Z.
Publicado 2017

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

por Starkenburg, Shawn R, Kwon, Kyungyoon J, Jha, Ramesh K, McKay, Cedar, Jacobs, Michael, Chertkov, Olga, Twary, Scott, Rocap, Gabrielle, Cattolico, Rose Ann
Publicado 2014

High-Quality Draft Genome Sequence of the Green Alga Tetraselmis striata (Chlorophyta) Generated from PacBio Sequencing

por Steadman Tyler, Christina R., Hovde, Blake T., Daligault, Hajnalka E., Zhang, Xiang Li, Kunde, Yuliya, Marrone, Babetta L., Twary, Scott N., Starkenburg, Shawn R.
Publicado 2019

Correction for Sanchez et al., “The Genome Sequence of an Algal Strain of Nannochloropsis QH25”

por Sanchez, Monica R., Biondi, Thomas C., Kunde, Yuliya A., Eng, Wyatt, Nalley, Jakob O., Ganuza, Eneko, Hovde, Blake T., Corcoran, Alina A., Starkenburg, Shawn R.
Publicado 2023

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

por Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, Starkenburg, Shawn R.
Publicado 2016

The Genome Sequence of an Algal Strain of Nannochloropsis QH25

por Sanchez, Monica R., Biondi, Thomas C., Kunde, Yuliya A., Eng, Wyatt, Nalley, Jakob O., Ganuza, Eneko, Hovde, Blake T., Corcoran, Alina A., Starkenburg, Shawn R.
Publicado 2022

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

por Hovde, Blake T, Starkenburg, Shawn R, Hunsperger, Heather M, Mercer, Laina D, Deodato, Chloe R, Jha, Ramesh K, Chertkov, Olga, Monnat, Raymond J, Cattolico, Rose Ann
Publicado 2014

Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin

por Fixen, Kathryn R., Starkenburg, Shawn R., Hovde, Blake T., Johnson, Shannon L., Deodato, Chloe R., Daligault, Hajnalka E., Davenport, Karen W., Harwood, Caroline S., Cattolico, Rose Ann
Publicado 2016

Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo

por Dahlin, Lukas R., Gerritsen, Alida T., Henard, Calvin A., Van Wychen, Stefanie, Linger, Jeffrey G., Kunde, Yuliya, Hovde, Blake T., Starkenburg, Shawn R., Posewitz, Matthew C., Guarnieri, Michael T.
Publicado 2019

Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant

por Yang, Yongil, Chou, Hong-Li, Crofts, Andrew J, Zhang, Laining, Tian, Li, Washida, Haruhiko, Fukuda, Masako, Kumamaru, Toshihiro, Oviedo, Oliver J, Starkenburg, Shawn R, Okita, Thomas W
Publicado 2018

Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)

por Hovde, Blake T., Deodato, Chloe R., Hunsperger, Heather M., Ryken, Scott A., Yost, Will, Jha, Ramesh K., Patterson, Johnathan, Monnat, Raymond J., Barlow, Steven B., Starkenburg, Shawn R., Cattolico, Rose Ann
Publicado 2015

A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology

por Calhoun, Sara, Bell, Tisza Ann Szeremy, Dahlin, Lukas R., Kunde, Yuliya, LaButti, Kurt, Louie, Katherine B., Kuftin, Andrea, Treen, Daniel, Dilworth, David, Mihaltcheva, Sirma, Daum, Christopher, Bowen, Benjamin P., Northen, Trent R., Guarnieri, Michael T., Starkenburg, Shawn R., Grigoriev, Igor V.
Publicado 2021

Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal

por Karmacharya, Dibesh, Manandhar, Prajwol, Manandhar, Sulochana, Sherchan, Adarsh M., Sharma, Ajay N., Joshi, Jyoti, Bista, Manisha, Bajracharya, Shailendra, Awasthi, Nagendra P., Sharma, Netra, Llewellyn, Bronwyn, Waits, Lisette P., Thapa, Kanchan, Kelly, Marcella J., Vuyisich, Momchilo, Starkenburg, Shawn R., Hero, Jean-Marc, Hughes, Jane, Wultsch, Claudia, Bertola, Laura, Fountain-Jones, Nicholas M., Sinha, Amit K.
Publicado 2019