Hypothesis: Trans‐splicing Generates Evolutionary Novelty in the Photosynthetic Amoeba Paulinella

por Gabr, Arwa, Stephens, Timothy G., Bhattacharya, Debashish
Publicado 2022

Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella

por Gabr, Arwa, Stephens, Timothy G., Bhattacharya, Debashish
Publicado 2022

Multiple waves of viral invasions in Symbiodiniaceae algal genomes

por Benites, L Felipe, Stephens, Timothy G, Bhattacharya, Debashish
Publicado 2022

Peeling back the layers of coral holobiont multi-omics data

por Williams, Amanda, Stephens, Timothy G., Shumaker, Alexander, Bhattacharya, Debashish
Publicado 2023

Ploidy Variation and Its Implications for Reproduction and Population Dynamics in Two Sympatric Hawaiian Coral Species

por Stephens, Timothy G, Strand, Emma L, Putnam, Hollie M, Bhattacharya, Debashish
Publicado 2023

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R

por Stephens, Timothy G., Bhattacharya, Debashish, Ragan, Mark A., Chan, Cheong Xin
Publicado 2016

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

por Stephens, Timothy G., Ragan, Mark A., Bhattacharya, Debashish, Chan, Cheong Xin
Publicado 2018

Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes

por Chen, Yibi, González‐Pech, Raúl A., Stephens, Timothy G., Bhattacharya, Debashish, Chan, Cheong Xin
Publicado 2020

Retrotransposition facilitated the establishment of a primary plastid in the thecate amoeba Paulinella

por Calatrava, Victoria, Stephens, Timothy G., Gabr, Arwa, Bhaya, Devaki, Bhattacharya, Debashish, Grossman, Arthur R.
Publicado 2022

Multi-omic characterization of the thermal stress phenome in the stony coral Montipora capitata

por Williams, Amanda, Pathmanathan, Jananan S., Stephens, Timothy G., Su, Xiaoyang, Chiles, Eric N., Conetta, Dennis, Putnam, Hollie M., Bhattacharya, Debashish
Publicado 2021

High-quality genome assemblies from key Hawaiian coral species

por Stephens, Timothy G, Lee, JunMo, Jeong, YuJin, Yoon, Hwan Su, Putnam, Hollie M, Majerová, Eva, Bhattacharya, Debashish
Publicado 2022

Development of a portable toolkit to diagnose coral thermal stress

por Meng, Zhuolun, Williams, Amanda, Liau, Pinky, Stephens, Timothy G., Drury, Crawford, Chiles, Eric N., Su, Xiaoyang, Javanmard, Mehdi, Bhattacharya, Debashish
Publicado 2022

Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions

por Stephens, Timothy G., González-Pech, Raúl A., Cheng, Yuanyuan, Mohamed, Amin R., Burt, David W., Bhattacharya, Debashish, Ragan, Mark A., Chan, Cheong Xin
Publicado 2020

Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaça Spirit Yeasts

por Jacobus, Ana Paula, Stephens, Timothy G., Youssef, Pierre, González-Pech, Raul, Ciccotosto-Camp, Michael M., Dougan, Katherine E., Chen, Yibi, Basso, Luiz Carlos, Frazzon, Jeverson, Chan, Cheong Xin, Gross, Jeferson
Publicado 2021

Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis

por Lhee, Duckhyun, Lee, JunMo, Ettahi, Khaoula, Cho, Chung Hyun, Ha, Ji-San, Chan, Ya-Fan, Zelzion, Udi, Stephens, Timothy G, Price, Dana C, Gabr, Arwa, Nowack, Eva C M, Bhattacharya, Debashish, Yoon, Hwan Su
Publicado 2020

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

por González-Pech, Raúl A., Stephens, Timothy G., Chen, Yibi, Mohamed, Amin R., Cheng, Yuanyuan, Shah, Sarah, Dougan, Katherine E., Fortuin, Michael D. A., Lagorce, Rémi, Burt, David W., Bhattacharya, Debashish, Ragan, Mark A., Chan, Cheong Xin
Publicado 2021

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

por Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J. H., Voolstra, Christian R., Ragan, Mark A., Chan, Cheong Xin
Publicado 2018

Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

por Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J. H., Voolstra, Christian R., Ragan, Mark A., Chan, Cheong Xin
Publicado 2018

Building consensus around the assessment and interpretation of Symbiodiniaceae diversity

por Davies, Sarah W., Gamache, Matthew H., Howe-Kerr, Lauren I., Kriefall, Nicola G., Baker, Andrew C., Banaszak, Anastazia T., Bay, Line Kolind, Bellantuono, Anthony J., Bhattacharya, Debashish, Chan, Cheong Xin, Claar, Danielle C., Coffroth, Mary Alice, Cunning, Ross, Davy, Simon K., del Campo, Javier, Díaz-Almeyda, Erika M., Frommlet, Jörg C., Fuess, Lauren E., González-Pech, Raúl A., Goulet, Tamar L., Hoadley, Kenneth D., Howells, Emily J., Hume, Benjamin C. C., Kemp, Dustin W., Kenkel, Carly D., Kitchen, Sheila A., LaJeunesse, Todd C., Lin, Senjie, McIlroy, Shelby E., McMinds, Ryan, Nitschke, Matthew R., Oakley, Clinton A., Peixoto, Raquel S., Prada, Carlos, Putnam, Hollie M., Quigley, Kate, Reich, Hannah G., Reimer, James Davis, Rodriguez-Lanetty, Mauricio, Rosales, Stephanie M., Saad, Osama S., Sampayo, Eugenia M., Santos, Scott R., Shoguchi, Eiichi, Smith, Edward G., Stat, Michael, Stephens, Timothy G., Strader, Marie E., Suggett, David J., Swain, Timothy D., Tran, Cawa, Traylor-Knowles, Nikki, Voolstra, Christian R., Warner, Mark E., Weis, Virginia M., Wright, Rachel M., Xiang, Tingting, Yamashita, Hiroshi, Ziegler, Maren, Correa, Adrienne M. S., Parkinson, John Everett
Publicado 2023