PRAWNS: compact pan-genomic features for whole-genome population genomics

por Javkar, Kiran, Rand, Hugh, Strain, Errol, Pop, Mihai
Publicado 2022

Analysis of High-Throughput Flow Cytometry Data Using plateCore

por Strain, Errol, Hahne, Florian, Brinkman, Ryan R., Haaland, Perry
Publicado 2009

Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994

por Pightling, Arthur W., Rand, Hugh, Strain, Errol, Pagotto, Franco
Publicado 2016

Genome Sequence of the Listeria monocytogenes Food Isolate HPB913, Collected in Canada in 1993

por Pightling, Arthur W., Rand, Hugh, Strain, Errol, Pagotto, Franco
Publicado 2016

Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

por Pightling, Arthur W., Pettengill, James B., Wang, Yu, Rand, Hugh, Strain, Errol
Publicado 2019

Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream

por Ottesen, Andrea, Ramachandran, Padmini, Chen, Yi, Brown, Eric, Reed, Elizabeth, Strain, Errol
Publicado 2020

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousa...

por Pettengill, James B., Pightling, Arthur W., Baugher, Joseph D., Rand, Hugh, Strain, Errol
Publicado 2016

GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization

por Sanaa, Moez, Pouillot, Régis, Vega, Francisco Garcés, Strain, Errol, Van Doren, Jane M.
Publicado 2019

Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates

por Ramachandran, Padmini, Reed, Elizabeth, Commichaux, Seth, Strain, Errol, Depaola, Angelo, Rikard, Scott, Ottesen, Andrea
Publicado 2018

Lociq provides a loci-seeking approach for enhanced plasmid subtyping and structural characterization

por Harrison, Lucas, Zhao, Shaohua, Li, Cong, McDermott, Patrick F., Tyson, Gregory H., Strain, Errol
Publicado 2023

Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

por Pightling, Arthur W., Pettengill, James B., Luo, Yan, Baugher, Joseph D., Rand, Hugh, Strain, Errol
Publicado 2018

Draft Genome Sequences of Paenibacillus alvei A6-6i and TS-15

por Luo, Yan, Wang, Charles, Allard, Sarah, Strain, Errol, Allard, Marc W., Brown, Eric W., Zheng, Jie
Publicado 2013

Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes

por Chen, Yi, Gonzalez-Escalona, Narjol, Hammack, Thomas S., Allard, Marc W., Strain, Errol A., Brown, Eric W.
Publicado 2016

Core Genome Multilocus Sequence Typing for Food Animal Source Attribution of Human Campylobacter jejuni Infections

por Hsu, Chih-Hao, Harrison, Lucas, Mukherjee, Sampa, Strain, Errol, McDermott, Patrick, Zhang, Qijing, Zhao, Shaohua
Publicado 2020

Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities

por Moran-Gilad, Jacob, Sintchenko, Vitali, Pedersen, Susanne Karlsmose, Wolfgang, William J, Pettengill, James, Strain, Errol, Hendriksen, Rene S
Publicado 2015

TreeToReads - a pipeline for simulating raw reads from phylogenies

por McTavish, Emily Jane, Pettengill, James, Davis, Steven, Rand, Hugh, Strain, Errol, Allard, Marc, Timme, Ruth E.
Publicado 2017

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

por Stevens, Eric L., Timme, Ruth, Brown, Eric W., Allard, Marc W., Strain, Errol, Bunning, Kelly, Musser, Steven
Publicado 2017

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

por Timme, Ruth E., Wolfgang, William J., Balkey, Maria, Venkata, Sai Laxmi Gubbala, Randolph, Robyn, Allard, Marc, Strain, Errol
Publicado 2020

Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth

por Reed, Elizabeth, Sanderson, Robert, Sanderson, Barbara, Ramachandran, Padmini, Commichaux, Seth, Brown, Eric, Zheng, Jie, Strain, Errol, Ottesen, Andrea
Publicado 2021

Phylogenetics and Differentiation of Salmonella Newport Lineages by Whole Genome Sequencing

por Cao, Guojie, Meng, Jianghong, Strain, Errol, Stones, Robert, Pettengill, James, Zhao, Shaohua, McDermott, Patrick, Brown, Eric, Allard, Marc
Publicado 2013