DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

por Eichten, Steven R., Stuart, Tim, Srivastava, Akanksha, Lister, Ryan, Borevitz, Justin O.
Publicado 2016

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

por Stuart, Tim, Eichten, Steven R, Cahn, Jonathan, Karpievitch, Yuliya V, Borevitz, Justin O, Lister, Ryan
Publicado 2016

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

por Zhang, Bingjie, Srivastava, Avi, Mimitou, Eleni, Stuart, Tim, Raimondi, Ivan, Hao, Yuhan, Smibert, Peter, Satija, Rahul
Publicado 2022

A single cell transcriptional roadmap for cardiopharyngeal fate diversification

por Wang, Wei, Niu, Xiang, Stuart, Tim, Jullian, Estelle, Mauck, William, Kelly, Robert G., Satija, Rahul, Christiaen, Lionel
Publicado 2019

A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana

por Rungrat, Tepsuda, Almonte, Andrew A., Cheng, Riyan, Gollan, Peter J., Stuart, Tim, Aro, Eva‐Mari, Borevitz, Justin O., Pogson, Barry, Wilson, Pip B.
Publicado 2019

geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq

por Missarova, Alsu, Jain, Jaison, Butler, Andrew, Ghazanfar, Shila, Stuart, Tim, Brusko, Maigan, Wasserfall, Clive, Nick, Harry, Brusko, Todd, Atkinson, Mark, Satija, Rahul, Marioni, John C.
Publicado 2021

Unique cell-type specific patterns of DNA methylation in the root meristem

por Kawakatsu, Taiji, Stuart, Tim, Valdes, Manuel, Breakfield, Natalie, Schmitz, Robert J., Nery, Joseph R., Urich, Mark A., Han, Xinwei, Lister, Ryan, Benfey, Philip N., Ecker, Joseph R.
Publicado 2016

Integrated analysis of multimodal single-cell data

por Hao, Yuhan, Hao, Stephanie, Andersen-Nissen, Erica, Mauck, William M., Zheng, Shiwei, Butler, Andrew, Lee, Maddie J., Wilk, Aaron J., Darby, Charlotte, Zager, Michael, Hoffman, Paul, Stoeckius, Marlon, Papalexi, Efthymia, Mimitou, Eleni P., Jain, Jaison, Srivastava, Avi, Stuart, Tim, Fleming, Lamar M., Yeung, Bertrand, Rogers, Angela J., McElrath, Juliana M., Blish, Catherine A., Gottardo, Raphael, Smibert, Peter, Satija, Rahul
Publicado 2021

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

por Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J., Siletti, Kimberly, Bakken, Trygve E., Fang, Rongxin, Doyle, Wayne I., Stuart, Tim, Hodge, Rebecca D., Hu, Lijuan, Wang, Bang-An, Zhang, Zhuzhu, Preissl, Sebastian, Lee, Dong-Sung, Zhou, Jingtian, Niu, Sheng-Yong, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R., Davis, David A., Mash, Deborah C., Satija, Rahul, Dixon, Jesse R., Linnarsson, Sten, Lein, Ed, Behrens, M. Margarita, Ren, Bing, Mukamel, Eran A., Ecker, Joseph R.
Publicado 2022