Large-Scale Analysis of Orthologs and Paralogs under Covarion-Like and Constant-but-Different Models of Amino Acid Evolution

por Studer, Romain A., Robinson-Rechavi, Marc
Publicado 2010

Selectome: a database of positive selection

por Proux, Estelle, Studer, Romain A., Moretti, Sébastien, Robinson-Rechavi, Marc
Publicado 2009

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

por Altenhoff, Adrian M., Studer, Romain A., Robinson-Rechavi, Marc, Dessimoz, Christophe
Publicado 2012

Positive Selection during the Evolution of the Blood Coagulation Factors in the Context of Their Disease-Causing Mutations

por Rallapalli, Pavithra M., Orengo, Christine A., Studer, Romain A., Perkins, Stephen J.
Publicado 2014

Vitellogenin Underwent Subfunctionalization to Acquire Caste and Behavioral Specific Expression in the Harvester Ant Pogonomyrmex barbatus

por Corona, Miguel, Libbrecht, Romain, Wurm, Yannick, Riba-Grognuz, Oksana, Studer, Romain A., Keller, Laurent
Publicado 2013

Understanding the functional difference between growth arrest-specific protein 6 and protein S: an evolutionary approach

por Studer, Romain A., Opperdoes, Fred R., Nicolaes, Gerry A. F., Mulder, André B., Mulder, René
Publicado 2014

Absence of Selection for Quantum Coherence in the Fenna–Matthews–Olson Complex: A Combined Evolutionary and Excitonic Study

por Valleau, Stéphanie, Studer, Romain A., Häse, Florian, Kreisbeck, Christoph, Saer, Rafael G., Blankenship, Robert E., Shakhnovich, Eugene I., Aspuru-Guzik, Alán
Publicado 2017

Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering

por Gutierrez-Mazariegos, Juliana, Nadendla, Eswar Kumar, Studer, Romain A., Alvarez, Susana, de Lera, Angel R., Kuraku, Shigehiro, Bourguet, William, Schubert, Michael, Laudet, Vincent
Publicado 2016

Correction to ‘Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering'

por Gutierrez-Mazariegos, Julianan, Nadendla, Eswar Kumar, Studer, Romain A., Alvarez, Susana, de Lera, Angel R., Kuraku, Shigehiro, Bourguet, William, Schubert, Michael, Laudet, Vincent
Publicado 2016

iProteinDB: An Integrative Database of Drosophila Post-translational Modifications

por Hu, Yanhui, Sopko, Richelle, Chung, Verena, Foos, Marianna, Studer, Romain A., Landry, Sean D., Liu, Daniel, Rabinow, Leonard, Gnad, Florian, Beltrao, Pedro, Perrimon, Norbert
Publicado 2018

Selectome update: quality control and computational improvements to a database of positive selection

por Moretti, Sébastien, Laurenczy, Balazs, Gharib, Walid H., Castella, Briséïs, Kuzniar, Arnold, Schabauer, Hannes, Studer, Romain A., Valle, Mario, Salamin, Nicolas, Stockinger, Heinz, Robinson-Rechavi, Marc
Publicado 2014

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

por Lees, Jonathan G., Lee, David, Studer, Romain A., Dawson, Natalie L., Sillitoe, Ian, Das, Sayoni, Yeats, Corin, Dessailly, Benoit H., Rentzsch, Robert, Orengo, Christine A.
Publicado 2014

Conserved phosphorylation hotspots in eukaryotic protein domain families

por Strumillo, Marta J., Oplová, Michaela, Viéitez, Cristina, Ochoa, David, Shahraz, Mohammed, Busby, Bede P., Sopko, Richelle, Studer, Romain A., Perrimon, Norbert, Panse, Vikram G., Beltrao, Pedro
Publicado 2019

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

por Sillitoe, Ian, Cuff, Alison L., Dessailly, Benoit H., Dawson, Natalie L., Furnham, Nicholas, Lee, David, Lees, Jonathan G., Lewis, Tony E., Studer, Romain A., Rentzsch, Robert, Yeats, Corin, Thornton, Janet M., Orengo, Christine A.
Publicado 2013

CATH: comprehensive structural and functional annotations for genome sequences

por Sillitoe, Ian, Lewis, Tony E., Cuff, Alison, Das, Sayoni, Ashford, Paul, Dawson, Natalie L., Furnham, Nicholas, Laskowski, Roman A., Lee, David, Lees, Jonathan G., Lehtinen, Sonja, Studer, Romain A., Thornton, Janet, Orengo, Christine A.
Publicado 2014

Selective deployment of transcription factor paralogs with submaximal strength facilitates gene regulation in the immune system

por Bruno, Ludovica, Ramlall, Vijendra, Studer, Romain A., Sauer, Stephan, Bradley, David, Dharmalingam, Gopuraja, Carroll, Thomas, Ghoneim, Mohamed, Chopin, Michaël, Nutt, Stephen L., Elderkin, Sarah, Rueda, David S., Fisher, Amanda G., Siggers, Trevor, Beltrao, Pedro, Merkenschlager, Matthias
Publicado 2019