Machine Learning of Stem Cell Identities From Single-Cell Expression Data via Regulatory Network Archetypes

por Stumpf, Patrick S., MacArthur, Ben D.
Publicado 2019

Theory of cell fate

por Casey, Michael J., Stumpf, Patrick S., MacArthur, Ben D.
Publicado 2019

First steps towards the successful surface-based cultivation of human embryonic stem cells in hanging drop systems

por Schulz, Julia C, Stumpf, Patrick S, Katsen-Globa, Alisa, Sachinidis, Agapios, Hescheler, Jürgen, Zimmermann, Heiko
Publicado 2012

MicroRNA-146a Regulates Human Foetal Femur Derived Skeletal Stem Cell Differentiation by Down-Regulating SMAD2 and SMAD3

por Cheung, Kelvin S. C., Sposito, Nunzia, Stumpf, Patrick S., Wilson, David I., Sanchez-Elsner, Tilman, Oreffo, Richard O. C.
Publicado 2014

Nanog Fluctuations in Embryonic Stem Cells Highlight the Problem of Measurement in Cell Biology

por Smith, Rosanna C.G., Stumpf, Patrick S., Ridden, Sonya J., Sim, Aaron, Filippi, Sarah, Harrington, Heather A., MacArthur, Ben D.
Publicado 2017

Quantification of intracellular payload release from polymersome nanoparticles

por Scarpa, Edoardo, Bailey, Joanne L., Janeczek, Agnieszka A., Stumpf, Patrick S., Johnston, Alexander H., Oreffo, Richard O. C., Woo, Yin L., Cheong, Ying C., Evans, Nicholas D., Newman, Tracey A.
Publicado 2016

An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans Cells

por Davies, James, Vallejo, Andres F., Sirvent, Sofia, Porter, Gemma, Clayton, Kalum, Qumbelo, Yamkela, Stumpf, Patrick, West, Jonathan, Gray, Clive M., Chigorimbo-Murefu, Nyaradzo T. L., MacArthur, Ben, Polak, Marta E.
Publicado 2021

POT1a deficiency in mesenchymal niches perturbs B-lymphopoiesis

por Nakashima, Kentaro, Kunisaki, Yuya, Hosokawa, Kentaro, Gotoh, Kazuhito, Yao, Hisayuki, Yuta, Ryosuke, Semba, Yuichiro, Nogami, Jumpei, Kikushige, Yoshikane, Stumpf, Patrick S., MacArthur, Ben D., Kang, Dongchon, Akashi, Koichi, Ohga, Shouichi, Arai, Fumio
Publicado 2023

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

por MacArthur, Ben D., Sevilla, Ana, Lenz, Michel, Müller, Franz-Josef, Schuldt, Berhard M., Schuppert, Andreas A., Ridden, Sonya J., Stumpf, Patrick S., Fidalgo, Miguel, Ma’ayan, Avi, Wang, Jianlong, Lemischka, Ihor R.
Publicado 2012

Single-cell RNA-sequence analysis of human bone marrow reveals new targets for isolation of skeletal stem cells using spherical nucleic acids

por Matthews, Elloise Z, Lanham, Stuart, White, Kate, Kyriazi, Maria-Eleni, Alexaki, Konstantina, El-Sagheer, Afaf H, Brown, Tom, Kanaras, Antonios G, J West, Jonathan, MacArthur, Ben D, Stumpf, Patrick S, Oreffo, Richard OC
Publicado 2023

Stem Cell Differentiation as a Non-Markov Stochastic Process

por Stumpf, Patrick S., Smith, Rosanna C.G., Lenz, Michael, Schuppert, Andreas, Müller, Franz-Josef, Babtie, Ann, Chan, Thalia E., Stumpf, Michael P.H., Please, Colin P., Howison, Sam D., Arai, Fumio, MacArthur, Ben D.
Publicado 2017

Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing

por Stumpf, Patrick S., Du, Xin, Imanishi, Haruka, Kunisaki, Yuya, Semba, Yuichiro, Noble, Timothy, Smith, Rosanna C. G., Rose-Zerili, Matthew, West, Jonathan J., Oreffo, Richard O. C., Farrahi, Katayoun, Niranjan, Mahesan, Akashi, Koichi, Arai, Fumio, MacArthur, Ben D.
Publicado 2020

Dual dean entrainment with volume ratio modulation for efficient droplet co-encapsulation: extreme single-cell indexing

por Harrington, Jack, Esteban, Luis Blay, Butement, Jonathan, Vallejo, Andres F., Lane, Simon I. R., Sheth, Bhavwanti, Jongen, Maaike S. A., Parker, Rachel, Stumpf, Patrick S., Smith, Rosanna C. G., MacArthur, Ben D., Rose-Zerilli, Matthew J. J., Polak, Marta E., Underwood, Tim, West, Jonathan
Publicado 2021

Genomic programming of IRF4-expressing human Langerhans cells

por Sirvent, Sofia, Vallejo, Andres F., Davies, James, Clayton, Kalum, Wu, Zhiguo, Woo, Jeongmin, Riddell, Jeremy, Chaudhri, Virendra K., Stumpf, Patrick, Nazlamova, Liliya Angelova, Wheway, Gabrielle, Rose-Zerilli, Matthew, West, Jonathan, Pujato, Mario, Chen, Xiaoting, Woelk, Christopher H., MacArthur, Ben, Ardern-Jones, Michael, Friedmann, Peter S., Weirauch, Matthew T., Singh, Harinder, Polak, Marta E.
Publicado 2020

Lesch-Nyhan disease causes impaired energy metabolism and reduced developmental potential in midbrain dopaminergic cells

por Bell, Scott, McCarty, Vincent, Peng, Huashan, Jefri, Malvin, Hettige, Nuwan, Antonyan, Lilit, Crapper, Liam, O'Leary, Liam A., Zhang, Xin, Zhang, Ying, Wu, Hanrong, Sutcliffe, Diane, Kolobova, Ilaria, Rosenberger, Thad A., Moquin, Luc, Gratton, Alain, Popic, Jelena, Gantois, Ilse, Stumpf, Patrick S., Schuppert, Andreas A., Mechawar, Naguib, Sonenberg, Nahum, Tremblay, Michel L., Jinnah, Hyder A., Ernst, Carl
Publicado 2021