Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles

por Li, Zhiguang, Su, Zhenqiang, Wen, Zhining, Shi, Leming, Chen, Tao
Publicado 2009

Very Important Pool (VIP) genes – an application for microarray-based molecular signatures

por Su, Zhenqiang, Hong, Huixiao, Fang, Hong, Shi, Leming, Perkins, Roger, Tong, Weida
Publicado 2008

Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats

por Yu, Ying, Zhao, Chen, Su, Zhenqiang, Wang, Charles, Fuscoe, James C, Tong, Weida, Shi, Leming
Publicado 2014

Evaluation of gene expression data generated from expired Affymetrix GeneChip(®) microarrays using MAQC reference RNA samples

por Wen, Zhining, Wang, Charles, Shi, Quan, Huang, Ying, Su, Zhenqiang, Hong, Huixiao, Tong, Weida, Shi, Leming
Publicado 2010

Prognostic relevance and performance characteristics of serum IGFBP‐2 and PAPP‐A in women with breast cancer: a long‐term Danish cohort study

por Espelund, Ulrick, Renehan, Andrew G., Cold, Søren, Oxvig, Claus, Lancashire, Lee, Su, Zhenqiang, Flyvbjerg, Allan, Frystyk, Jan
Publicado 2018

Constructing a robust protein-protein interaction network by integrating multiple public databases

por Martha, Venkata-Swamy, Liu, Zhichao, Guo, Li, Su, Zhenqiang, Ye, Yanbin, Fang, Hong, Ding, Don, Tong, Weida, Xu, Xiaowei
Publicado 2011

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population

por Zhang, Wenqian, Meehan, Joe, Su, Zhenqiang, Ng, Hui Wen, Shu, Mao, Luo, Heng, Ge, Weigong, Perkins, Roger, Tong, Weida, Hong, Huixiao
Publicado 2014

Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid

por Li, Zhiguang, Qin, Taichun, Wang, Kejian, Hackenberg, Michael, Yan, Jian, Gao, Yuan, Yu, Li-Rong, Shi, Leming, Su, Zhenqiang, Chen, Tao
Publicado 2015

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq

por Gong, Binsheng, Wang, Charles, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Auerbach, Scott S., Tong, Weida, Xu, Joshua
Publicado 2014

Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq

por Xu, Joshua, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Kreil, David P., Mason, Christopher E., Tong, Weida, Shi, Leming
Publicado 2014

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

por Hong, Huixiao, Su, Zhenqiang, Ge, Weigong, Shi, Leming, Perkins, Roger, Fang, Hong, Xu, Joshua, Chen, James J, Han, Tao, Kaput, Jim, Fuscoe, James C, Tong, Weida
Publicado 2008

atBioNet– an integrated network analysis tool for genomics and biomarker discovery

por Ding, Yijun, Chen, Minjun, Liu, Zhichao, Ding, Don, Ye, Yanbin, Zhang, Min, Kelly, Reagan, Guo, Li, Su, Zhenqiang, Harris, Stephen C, Qian, Feng, Ge, Weigong, Fang, Hong, Xu, Xiaowei, Tong, Weida
Publicado 2012

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays

por Fang, Hong, Xu, Joshua, Ding, Don, Jackson, Scott A, Patel, Isha R, Frye, Jonathan G, Zou, Wen, Nayak, Rajesh, Foley, Steven, Chen, James, Su, Zhenqiang, Ye, Yanbin, Turner, Steve, Harris, Steve, Zhou, Guangxu, Cerniglia, Carl, Tong, Weida
Publicado 2010

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era

por Su, Zhenqiang, Fang, Hong, Hong, Huixiao, Shi, Leming, Zhang, Wenqian, Zhang, Wenwei, Zhang, Yanyan, Dong, Zirui, Lancashire, Lee J, Bessarabova, Marina, Yang, Xi, Ning, Baitang, Gong, Binsheng, Meehan, Joe, Xu, Joshua, Ge, Weigong, Perkins, Roger, Fischer, Matthias, Tong, Weida
Publicado 2014

Microarray scanner calibration curves: characteristics and implications

por Shi, Leming, Tong, Weida, Su, Zhenqiang, Han, Tao, Han, Jing, Puri, Raj K, Fang, Hong, Frueh, Felix W, Goodsaid, Federico M, Guo, Lei, Branham, William S, Chen, James J, Xu, Z Alex, Harris, Stephen C, Hong, Huixiao, Xie, Qian, Perkins, Roger G, Fuscoe, James C
Publicado 2005

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential

por Shi, Leming, Tong, Weida, Fang, Hong, Scherf, Uwe, Han, Jing, Puri, Raj K, Frueh, Felix W, Goodsaid, Federico M, Guo, Lei, Su, Zhenqiang, Han, Tao, Fuscoe, James C, Xu, Z Alex, Patterson, Tucker A, Hong, Huixiao, Xie, Qian, Perkins, Roger G, Chen, James J, Casciano, Daniel A
Publicado 2005

Technical Reproducibility of Genotyping SNP Arrays Used in Genome-Wide Association Studies

por Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D., Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G., Vega, Silvia C., Lin, Simon M., Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D., Goodsaid, Federico, Tong, Weida, Shi, Leming
Publicado 2012

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

por Yu, Ying, Fuscoe, James C., Zhao, Chen, Guo, Chao, Jia, Meiwen, Qing, Tao, Bannon, Desmond I., Lancashire, Lee, Bao, Wenjun, Du, Tingting, Luo, Heng, Su, Zhenqiang, Jones, Wendell D., Moland, Carrie L., Branham, William S., Qian, Feng, Ning, Baitang, Li, Yan, Hong, Huixiao, Guo, Lei, Mei, Nan, Shi, Tieliu, Wang, Kevin Y., Wolfinger, Russell D., Nikolsky, Yuri, Walker, Stephen J., Duerksen-Hughes, Penelope, Mason, Christopher E., Tong, Weida, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Wang, Charles
Publicado 2014

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

por Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida
Publicado 2008

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

por Pan, Bohu, Ren, Luyao, Onuchic, Vitor, Guan, Meijian, Kusko, Rebecca, Bruinsma, Steve, Trigg, Len, Scherer, Andreas, Ning, Baitang, Zhang, Chaoyang, Glidewell-Kenney, Christine, Xiao, Chunlin, Donaldson, Eric, Sedlazeck, Fritz J., Schroth, Gary, Yavas, Gokhan, Grunenwald, Haiying, Chen, Haodong, Meinholz, Heather, Meehan, Joe, Wang, Jing, Yang, Jingcheng, Foox, Jonathan, Shang, Jun, Miclaus, Kelci, Dong, Lianhua, Shi, Leming, Mohiyuddin, Marghoob, Pirooznia, Mehdi, Gong, Ping, Golshani, Rooz, Wolfinger, Russ, Lababidi, Samir, Sahraeian, Sayed Mohammad Ebrahim, Sherry, Steve, Han, Tao, Chen, Tao, Shi, Tieliu, Hou, Wanwan, Ge, Weigong, Zou, Wen, Guo, Wenjing, Bao, Wenjun, Xiao, Wenzhong, Fan, Xiaohui, Gondo, Yoichi, Yu, Ying, Zhao, Yongmei, Su, Zhenqiang, Liu, Zhichao, Tong, Weida, Xiao, Wenming, Zook, Justin M., Zheng, Yuanting, Hong, Huixiao
Publicado 2022