MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions

por Andrighetti, Tahila, Bohar, Balazs, Lemke, Ney, Sudhakar, Padhmanand, Korcsmaros, Tamas
Publicado 2020

Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions

por Sudhakar, Padhmanand, Machiels, Kathleen, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine
Publicado 2021

What We Learned From Big Data for Autophagy Research

por Jacomin, Anne-Claire, Gul, Lejla, Sudhakar, Padhmanand, Korcsmaros, Tamas, Nezis, Ioannis P.
Publicado 2018

Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton

por Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Dobler, Irene W, Zeng, An-Ping
Publicado 2014

Erratum to: Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton

por Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Wagner-Döbler, Irene, Zeng, An-Ping
Publicado 2014

Big data in IBD: big progress for clinical practice

por Seyed Tabib, Nasim Sadat, Madgwick, Matthew, Sudhakar, Padhmanand, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine
Publicado 2020

Understanding the Molecular Drivers of Disease Heterogeneity in Crohn’s Disease Using Multi-omic Data Integration and Network Analysis

por Sudhakar, Padhmanand, Verstockt, Bram, Cremer, Jonathan, Verstockt, Sare, Sabino, João, Ferrante, Marc, Vermeire, Séverine
Publicado 2020

Tailoring Multi-omics to Inflammatory Bowel Diseases: All for One and One for All

por Sudhakar, Padhmanand, Alsoud, Dahham, Wellens, Judith, Verstockt, Sare, Arnauts, Kaline, Verstockt, Bram, Vermeire, Severine
Publicado 2022

Distinct transcriptional signatures in purified circulating immune cells drive heterogeneity in disease location in IBD

por Verstockt, Bram, Verstockt, Sare, Cremer, Jonathan, Sabino, João, Ferrante, Marc, Vermeire, Severine, Sudhakar, Padhmanand
Publicado 2023

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

por Demeter, Amanda, Romero-Mulero, Mari Carmen, Csabai, Luca, Ölbei, Márton, Sudhakar, Padhmanand, Haerty, Wilfried, Korcsmáros, Tamás
Publicado 2020

Integrated analysis of microbe-host interactions in Crohn’s disease reveals potential mechanisms of microbial proteins on host gene expression

por Sudhakar, Padhmanand, Andrighetti, Tahila, Verstockt, Sare, Caenepeel, Clara, Ferrante, Marc, Sabino, João, Verstockt, Bram, Vermeire, Severine
Publicado 2022

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains

por Song, Lifu, Sudhakar, Padhmanand, Wang, Wei, Conrads, Georg, Brock, Anke, Sun, Jibin, Wagner-Döbler, Irene, Zeng, An-Ping
Publicado 2012

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

por Métris, Aline, Sudhakar, Padhmanand, Fazekas, David, Demeter, Amanda, Ari, Eszter, Olbei, Marton, Branchu, Priscilla, Kingsley, Rob A., Baranyi, Jozsef, Korcsmáros, Tamas
Publicado 2017

Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level

por Olbei, Marton, Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Sudhakar, Padhmanand, Hautefort, Isabelle, Métris, Aline, Baranyi, Jozsef, Kingsley, Robert A., Korcsmaros, Tamas
Publicado 2022

Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inf...

por Gul, Lejla, Modos, Dezso, Fonseca, Sonia, Madgwick, Matthew, Thomas, John P., Sudhakar, Padhmanand, Booth, Catherine, Stentz, Régis, Carding, Simon R., Korcsmaros, Tamas
Publicado 2022

Targeted interplay between bacterial pathogens and host autophagy

por Sudhakar, Padhmanand, Jacomin, Anne-Claire, Hautefort, Isabelle, Samavedam, Siva, Fatemian, Koorosh, Ari, Eszter, Gul, Leila, Demeter, Amanda, Jones, Emily, Korcsmaros, Tamas, Nezis, Ioannis P.
Publicado 2019

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

por Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
Publicado 2021

Microbiota, not host origin drives ex vivo intestinal epithelial responses

por Arnauts, Kaline, Sudhakar, Padhmanand, Verstockt, Sare, Lapierre, Cynthia, Potche, Selina, Caenepeel, Clara, Verstockt, Bram, Raes, Jeroen, Vermeire, Séverine, Sabino, João, Verfaillie, Catherine, Ferrante, Marc
Publicado 2022

Evolution of regulatory networks associated with traits under selection in cichlids

por Mehta, Tarang K., Koch, Christopher, Nash, Will, Knaack, Sara A., Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
Publicado 2021

The Proteome of Extracellular Vesicles Produced by the Human Gut Bacteria Bacteroides thetaiotaomicron In Vivo Is Influenced by Environmental and Host-Derived Factors

por Stentz, Régis, Jones, Emily, Juodeikis, Rokas, Wegmann, Udo, Guirro, Maria, Goldson, Andrew J., Brion, Arlaine, Booth, Catherine, Sudhakar, Padhmanand, Brown, Ian R., Korcsmáros, Tamás, Carding, Simon R.
Publicado 2022