Using Computational Drug-Gene Analysis to Identify Novel Therapeutic Candidates for Retinal Neuroprotection

por Xie, Edward, Nadeem, Urooba, Xie, Bingqing, D’Souza, Mark, Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2022

Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Proliferative Vitreoretinopathy

por Xie, Edward F., Xie, Bingqing, Nadeem, Urooba, D'Souza, Mark, Reem, Gonnah, Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2023

CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid

por Tan, Wei, Madduri, Ravi, Nenadic, Alexandra, Soiland-Reyes, Stian, Sulakhe, Dinanath, Foster, Ian, Goble, Carole A
Publicado 2010

Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Age-Related Macular Degeneration

por Nadeem, Urooba, Xie, Bingqing, Xie, Edward F., D'Souza, Mark, Dao, David, Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2022

Identifying novel candidate compounds for therapeutic strategies in retinopathy of prematurity via computational drug-gene association analysis

por Xie, Edward F., Hilkert Rodriguez, Sarah, Xie, Bingqing, D’Souza, Mark, Reem, Gonnah, Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2023

Article Withdrawn: GNARE: A Grid-based Server for the Analysis of User Submitted Genomes

por Glass, Elizabeth, Rodriguez, Alexis, Romine, Margaret, Zhang, Yi, D'Souza, Mark, Sulakhe, Dinanath, Syed, Mustafa, Maltsev, Natalia
Publicado 2012

PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways

por Maltsev, Natalia, Glass, Elizabeth, Sulakhe, Dinanath, Rodriguez, Alexis, Syed, Mustafa H., Bompada, Tanuja, Zhang, Yi, D'Souza, Mark
Publicado 2006

A case study for cloud based high throughput analysis of NGS data using the globus genomics system

por Bhuvaneshwar, Krithika, Sulakhe, Dinanath, Gauba, Robinder, Rodriguez, Alex, Madduri, Ravi, Dave, Utpal, Lacinski, Lukasz, Foster, Ian, Gusev, Yuriy, Madhavan, Subha
Publicado 2014

Lynx web services for annotations and systems analysis of multi-gene disorders

por Sulakhe, Dinanath, Taylor, Andrew, Balasubramanian, Sandhya, Feng, Bo, Xie, Bingqing, Börnigen, Daniela, Dave, Utpal J., Foster, Ian T., Gilliam, T. Conrad, Maltsev, Natalia
Publicado 2014

High-Fat Diet Alters the Retinal Pigment Epithelium and Choroidal Transcriptome in the Absence of Gut Microbiota

por Xiao, Jason, Xie, Bingqing, Dao, David, Spedale, Melanie, D’Souza, Mark, Theriault, Betty, Hariprasad, Seenu M., Sulakhe, Dinanath, Chang, Eugene B., Skondra, Dimitra
Publicado 2022

Lynx: a database and knowledge extraction engine for integrative medicine

por Sulakhe, Dinanath, Balasubramanian, Sandhya, Xie, Bingqing, Feng, Bo, Taylor, Andrew, Wang, Sheng, Berrocal, Eduardo, Dave, Utpal, Xu, Jinbo, Börnigen, Daniela, Gilliam, T. Conrad, Maltsev, Natalia
Publicado 2014

High-Fat Diet Alters the Retinal Transcriptome in the Absence of Gut Microbiota

por Dao, David, Xie, Bingqing, Nadeem, Urooba, Xiao, Jason, Movahedan, Asad, D’Souza, Mark, Leone, Vanessa, Hariprasad, Seenu M., Chang, Eugene B., Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2021

Bacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment

por Oliphant, Kaitlyn, Ali, Mehneez, D’Souza, Mark, Hughes, Patrick D., Sulakhe, Dinanath, Wang, Annie Z., Xie, Bingqing, Yeasin, Rummanu, Msall, Michael E., Andrews, Bree, Claud, Erika C.
Publicado 2021

Lynx: a knowledge base and an analytical workbench for integrative medicine

por Sulakhe, Dinanath, Xie, Bingqing, Taylor, Andrew, D'Souza, Mark, Balasubramanian, Sandhya, Hashemifar, Somaye, White, Steven, Dave, Utpal J., Agam, Gady, Xu, Jinbo, Wang, Sheng, Gilliam, T. Conrad, Maltsev, Natalia
Publicado 2016

Absence of Gut Microbiota Is Associated with RPE/Choroid Transcriptomic Changes Related to Age-Related Macular Degeneration Pathobiology and Decreased Choroidal Neovascularization

por Zhang, Jason Y., Xie, Bingqing, Barba, Hugo, Nadeem, Urooba, Movahedan, Asadolah, Deng, Nini, Spedale, Melanie, D’Souza, Mark, Luo, Wendy, Leone, Vanessa, Chang, Eugene B., Theriault, Betty, Sulakhe, Dinanath, Skondra, Dimitra
Publicado 2022

Correction: Reproducible big data science: A case study in continuous FAIRness

por Madduri, Ravi, Chard, Kyle, D’Arcy, Mike, Jung, Segun C., Rodriguez, Alexis, Sulakhe, Dinanath, Deutsch, Eric, Funk, Cory, Heavner, Ben, Richards, Matthew, Shannon, Paul, Glusman, Gustavo, Price, Nathan, Kesselman, Carl, Foster, Ian
Publicado 2023

Reproducible big data science: A case study in continuous FAIRness

por Madduri, Ravi, Chard, Kyle, D’Arcy, Mike, Jung, Segun C., Rodriguez, Alexis, Sulakhe, Dinanath, Deutsch, Eric, Funk, Cory, Heavner, Ben, Richards, Matthew, Shannon, Paul, Glusman, Gustavo, Price, Nathan, Kesselman, Carl, Foster, Ian
Publicado 2019

Imbalanced gut microbiota predicts and drives the progression of nonalcoholic fatty liver disease and nonalcoholic steatohepatitis in a fast-food diet mouse model

por Fei, Na, Miyoshi, Sawako, Hermanson, Jake B., Miyoshi, Jun, Xie, Bingqing, DeLeon, Orlando, Hawkins, Maximilian, Charlton, William, D’Souza, Mark, Hart, John, Sulakhe, Dinanath, Martinez-Guryn, Kristina B., Chang, Eugene B., Charlton, Michael R., Leone, Vanessa A.
Publicado 2023

An Integrative Computational Approach for Prioritization of Genomic Variants

por Dubchak, Inna, Balasubramanian, Sandhya, Wang, Sheng, Meyden, Cem, Sulakhe, Dinanath, Poliakov, Alexander, Börnigen, Daniela, Xie, Bingqing, Taylor, Andrew, Ma, Jianzhu, Paciorkowski, Alex R., Mirzaa, Ghayda M., Dave, Paul, Agam, Gady, Xu, Jinbo, Al-Gazali, Lihadh, Mason, Christopher E., Ross, M. Elizabeth, Maltsev, Natalia, Gilliam, T. Conrad
Publicado 2014

Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer

por Zhou, Xunian, Kurywchak, Paul, Wolf-Dennen, Kerri, Che, Sara P.Y., Sulakhe, Dinanath, D’Souza, Mark, Xie, Bingqing, Maltsev, Natalia, Gilliam, T. Conrad, Wu, Chia-Chin, McAndrews, Kathleen M., LeBleu, Valerie S., McConkey, David J., Volpert, Olga V., Pretzsch, Shanna M., Czerniak, Bogdan A., Dinney, Colin P., Kalluri, Raghu
Publicado 2021