Tissue-specific regulatory elements in mammalian promoters

por Smith, Andrew D, Sumazin, Pavel, Zhang, Michael Q
Publicado 2007

A Systems Biology Approach to Transcription Factor Binding Site Prediction

por Zhou, Xiang, Sumazin, Pavel, Rajbhandari, Presha, Califano, Andrea
Publicado 2010

Editorial: The RNA Revolution in Embryonic Development and Cell Differentiation in Health and Disease

por Rosa, Alessandro, Ciaudo, Constance, Sumazin, Pavel, Fazi, Francesco
Publicado 2021

Correlating measurements across samples improves accuracy of large-scale expression profile experiments

por Alvarez, Mariano Javier, Sumazin, Pavel, Rajbhandari, Presha, Califano, Andrea
Publicado 2009

Epitranscriptomics: Correlation of N(6)-methyladenosine RNA methylation and pathway dysregulation in the hippocampus of HIV transgenic rats

por Fu, Yu, Zorman, Barry, Sumazin, Pavel, Sanna, Pietro Paolo, Repunte-Canonigo, Vez
Publicado 2019

High-throughput validation of ceRNA regulatory networks

por Chiu, Hua-Sheng, Martínez, María Rodríguez, Bansal, Mukesh, Subramanian, Aravind, Golub, Todd R., Yang, Xuerui, Sumazin, Pavel, Califano, Andrea
Publicado 2017

MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis

por Zheng, Jun-Jie, Wang, Po-Wen, Huang, Tzu-Wen, Yang, Yao-Jong, Chiu, Hua-Sheng, Sumazin, Pavel, Chen, Ting-Wen
Publicado 2022

MMTV-Espl1 Transgenic Mice Develop Aneuploid, Estrogen Receptor Alpha (ERα)-Positive Mammary Adenocarcinomas

por Mukherjee, Malini, Ge, Gouqing, Zhang, Nenggang, Edwards, David G., Sumazin, Pavel, Sharan, Shyam K., Rao, Pulivarthi H., Medina, Daniel, Pati, Debananda
Publicado 2013

Direct ChIP-Seq significance analysis improves target prediction

por Bansal, Mukesh, Mendiratta, Geetu, Anand, Santosh, Kushwaha, Ritu, Kim, Ryan Hyunjae, Kustagi, Manju, Iyer, Archana, Chaganti, Raju SK, Califano, Andrea, Sumazin, Pavel
Publicado 2015

A novel humanized mouse lacking murine P450 oxidoreductase for studying human drug metabolism

por Barzi, Mercedes, Pankowicz, Francis P., Zorman, Barry, Liu, Xing, Legras, Xavier, Yang, Diane, Borowiak, Malgorzata, Bissig-Choisat, Beatrice, Sumazin, Pavel, Li, Feng, Bissig, Karl-Dimiter
Publicado 2017

Erratum: A novel humanized mouse lacking murine p450 oxidoreductase for studying human drug metabolism

por Barzi, Mercedes, Pankowicz, Francis P., Zorman, Barry, Liu, Xing, Legras, Xavier, Yang, Diane, Borowiak, Malgorzata, Bissig-Choisat, Beatrice, Sumazin, Pavel, Li, Feng, Bissig, Karl-Dimiter
Publicado 2017

The number of titrated microRNA species dictates ceRNA regulation

por Chiu, Hua-Sheng, Martínez, María Rodríguez, . Komissarova, Elena V, Llobet-Navas, David, Bansal, Mukesh, Paull, Evan O, Silva, José, Yang, Xuerui, Sumazin, Pavel, Califano, Andrea
Publicado 2018

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

por Chiu, Hua-Sheng, Somvanshi, Sonal, Patel, Ektaben, Chen, Ting-Wen, Singh, Vivek P., Zorman, Barry, Patil, Sagar L., Pan, Yinghong, Chatterjee, Sujash S., Sood, Anil K., Gunaratne, Preethi H., Sumazin, Pavel
Publicado 2018

Escalated (Dependent) Oxycodone Self-Administration Is Associated with Cognitive Impairment and Transcriptional Evidence of Neurodegeneration in Human Immunodeficiency Virus (HIV)...

por Fu, Yu, Lorrai, Irene, Zorman, Barry, Mercatelli, Daniele, Shankula, Chase, Marquez Gaytan, Jorge, Lefebvre, Celine, de Guglielmo, Giordano, Kim, Hyunjae Ryan, Sumazin, Pavel, Giorgi, Federico M., Repunte-Canonigo, Vez, Sanna, Pietro Paolo
Publicado 2022

Reprogramming metabolic pathways in vivo with CRISPR/Cas9 genome editing to treat hereditary tyrosinaemia

por Pankowicz, Francis P., Barzi, Mercedes, Legras, Xavier, Hubert, Leroy, Mi, Tian, Tomolonis, Julie A., Ravishankar, Milan, Sun, Qin, Yang, Diane, Borowiak, Malgorzata, Sumazin, Pavel, Elsea, Sarah H., Bissig-Choisat, Beatrice, Bissig, Karl-Dimiter
Publicado 2016

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

por Lefebvre, Celine, Rajbhandari, Presha, Alvarez, Mariano J, Bandaru, Pradeep, Lim, Wei Keat, Sato, Mai, Wang, Kai, Sumazin, Pavel, Kustagi, Manjunath, Bisikirska, Brygida C, Basso, Katia, Beltrao, Pedro, Krogan, Nevan, Gautier, Jean, Dalla-Favera, Riccardo, Califano, Andrea
Publicado 2010

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks

por Chiu, Hua-Sheng, Llobet-Navas, David, Yang, Xuerui, Chung, Wei-Jen, Ambesi-Impiombato, Alberto, Iyer, Archana, Kim, Hyunjae Ryan, Seviour, Elena G., Luo, Zijun, Sehgal, Vasudha, Moss, Tyler, Lu, Yiling, Ram, Prahlad, Silva, José, Mills, Gordon B., Califano, Andrea, Sumazin, Pavel
Publicado 2015

A Novel Cell Line Based Orthotopic Xenograft Mouse Model That Recapitulates Human Hepatoblastoma

por Woodfield, Sarah E., Shi, Yan, Patel, Roma H., Jin, Jingling, Major, Angela, Sarabia, Stephen F., Starosolski, Zbigniew, Zorman, Barry, Gupta, Siddharth S., Chen, Zhenghu, Ibarra, Aryana M., Bissig, Karl-Dimiter, Ghaghada, Ketan B., Sumazin, Pavel, López-Terrada, Dolores, Vasudevan, Sanjeev A.
Publicado 2017

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes

por Rombaut, Dries, Chiu, Hua-Sheng, Decaesteker, Bieke, Everaert, Celine, Yigit, Nurten, Peltier, Agathe, Janoueix-Lerosey, Isabelle, Bartenhagen, Christoph, Fischer, Matthias, Roberts, Stephen, D’Haene, Nicky, De Preter, Katleen, Speleman, Frank, Denecker, Geertrui, Sumazin, Pavel, Vandesompele, Jo, Lefever, Steve, Mestdagh, Pieter
Publicado 2019

Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes

por Rombaut, Dries, Chiu, Hua-Sheng, Decaesteker, Bieke, Everaert, Celine, Yigit, Nurten, Peltier, Agathe, Janoueix-Lerosey, Isabelle, Bartenhagen, Christoph, Fischer, Matthias, Roberts, Stephen, D’Haene, Nicky, De Preter, Katleen, Speleman, Frank, Denecker, Geertrui, Sumazin, Pavel, Vandesompele, Jo, Lefever, Steve, Mestdagh, Pieter
Publicado 2019