Enhanced differential expression statistics for data-independent acquisition proteomics

por Suomi, Tomi, Elo, Laura L.
Publicado 2017

A systematic evaluation of normalization methods in quantitative label-free proteomics

por Välikangas, Tommi, Suomi, Tomi, Elo, Laura L
Publicado 2016

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation

por Välikangas, Tommi, Suomi, Tomi, Elo, Laura L
Publicado 2017

Introducing untargeted data-independent acquisition for metaproteomics of complex microbial samples

por Pietilä, Sami, Suomi, Tomi, Elo, Laura L.
Publicado 2022

Computational solutions for spatial transcriptomics

por Kleino, Iivari, Frolovaitė, Paulina, Suomi, Tomi, Elo, Laura L.
Publicado 2022

ROTS: An R package for reproducibility-optimized statistical testing

por Suomi, Tomi, Seyednasrollah, Fatemeh, Jaakkola, Maria K., Faux, Thomas, Elo, Laura L.
Publicado 2017

COVID-19-specific transcriptomic signature detectable in blood across multiple cohorts

por Välikangas, Tommi, Junttila, Sini, Rytkönen, Kalle T., Kukkonen-Macchi, Anu, Suomi, Tomi, Elo, Laura L.
Publicado 2022

SimPhospho: a software tool enabling confident phosphosite assignment

por Suni, Veronika, Suomi, Tomi, Tsubosaka, Tomoya, Imanishi, Susumu Y, Elo, Laura L, Corthals, Garry L
Publicado 2018

PhosPiR: an automated phosphoproteomic pipeline in R

por Hong, Ye, Flinkman, Dani, Suomi, Tomi, Pietilä, Sami, James, Peter, Coffey, Eleanor, Elo, Laura L
Publicado 2021

Correction to: PhosPiR: an automated phosphoproteomic pipeline in R

por Hong, Ye, Flinkman, Dani, Suomi, Tomi, Pietilä, Sami, James, Peter, Coffey, Eleanor, Elo, Laura L
Publicado 2022

HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma

por Miikkulainen, Petra, Högel, Heidi, Rantanen, Krista, Suomi, Tomi, Kouvonen, Petri, Elo, Laura L., Jaakkola, Panu M.
Publicado 2017

Improved risk prediction of chemotherapy‐induced neutropenia—model development and validation with real‐world data

por Venäläinen, Mikko S., Heervä, Eetu, Hirvonen, Outi, Saraei, Sohrab, Suomi, Tomi, Mikkola, Toni, Bärlund, Maarit, Jyrkkiö, Sirkku, Laitinen, Tarja, Elo, Laura L.
Publicado 2021

Profiling of peripheral blood B-cell transcriptome in children who developed coeliac disease in a prospective study()

por Oras, Astrid, Kallionpää, Henna, Suomi, Tomi, Koskinen, Satu, Laiho, Asta, Elo, Laura L., Knip, Mikael, Lahesmaa, Riitta, Aints, Alar, Uibo, Raivo
Publicado 2023

Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach

por Välikangas, Tommi, Suomi, Tomi, Chandler, Courtney E., Scott, Alison J., Tran, Bao Q., Ernst, Robert K., Goodlett, David R., Elo, Laura L.
Publicado 2022

Type 1 Diabetes in Children With Genetic Risk May Be Predicted Very Early With a Blood miRNA

por Suomi, Tomi, Kalim, Ubaid Ullah, Rasool, Omid, Laiho, Asta, Kallionpää, Henna, Vähä-Mäkilä, Mari, Nurmio, Mirja, Mykkänen, Juha, Härkönen, Taina, Hyöty, Heikki, Ilonen, Jorma, Veijola, Riitta, Toppari, Jorma, Knip, Mikael, Elo, Laura L., Lahesmaa, Riitta
Publicado 2022

Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory

por Moulder, Robert, Välikangas, Tommi, Hirvonen, M. Karoliina, Suomi, Tomi, Brorsson, Caroline A., Lietzén, Niina, Bruggraber, Sylvaine F. A., Overbergh, Lut, Dunger, David B., Peakman, Mark, Chmura, Piotr J., Brunak, Soren, Schulte, Anke M., Mathieu, Chantal, Knip, Mikael, Elo, Laura L., Lahesmaa, Riitta
Publicado 2023

Gene expression signature predicts rate of type 1 diabetes progression

por Suomi, Tomi, Starskaia, Inna, Kalim, Ubaid Ullah, Rasool, Omid, Jaakkola, Maria K., Grönroos, Toni, Välikangas, Tommi, Brorsson, Caroline, Mazzoni, Gianluca, Bruggraber, Sylvaine, Overbergh, Lut, Dunger, David, Peakman, Mark, Chmura, Piotr, Brunak, Søren, Schulte, Anke M., Mathieu, Chantal, Knip, Mikael, Lahesmaa, Riitta, Elo, Laura L.
Publicado 2023

Compressive stress-mediated p38 activation required for ERα + phenotype in breast cancer

por Munne, Pauliina M., Martikainen, Lahja, Räty, Iiris, Bertula, Kia, Nonappa, Ruuska, Janika, Ala-Hongisto, Hanna, Peura, Aino, Hollmann, Babette, Euro, Lilya, Yavuz, Kerim, Patrikainen, Linda, Salmela, Maria, Pokki, Juho, Kivento, Mikko, Väänänen, Juho, Suomi, Tomi, Nevalaita, Liina, Mutka, Minna, Kovanen, Panu, Leidenius, Marjut, Meretoja, Tuomo, Hukkinen, Katja, Monni, Outi, Pouwels, Jeroen, Sahu, Biswajyoti, Mattson, Johanna, Joensuu, Heikki, Heikkilä, Päivi, Elo, Laura L., Metcalfe, Ciara, Junttila, Melissa R., Ikkala, Olli, Klefström, Juha
Publicado 2021