GTM-decon: guided-topic modeling of single-cell transcriptomes enables sub-cell-type and disease-subtype deconvolution of bulk transcriptomes

por Swapna, Lakshmipuram Seshadri, Huang, Michael, Li, Yue
Publicado 2023

Accommodation of profound sequence differences at the interfaces of eubacterial RNA polymerase multi-protein assembly

por Swapna, Lakshmipuram Seshadri, Rekha, Nambudiry, Srinivasan, Narayanaswamy
Publicado 2012

Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance

por Swapna, Lakshmipuram Seshadri, Srikeerthana, Kuchi, Srinivasan, Narayanaswamy
Publicado 2012

Roles of residues in the interface of transient protein-protein complexes before complexation

por Swapna, Lakshmipuram S., Bhaskara, Ramachandra M., Sharma, Jyoti, Srinivasan, Narayanaswamy
Publicado 2012

Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins

por Swapna, Lakshmipuram S, Mahajan, Swapnil, de Brevern, Alexandre G, Srinivasan, Narayanaswamy
Publicado 2012

The origins of the evolutionary signal used to predict protein-protein interactions

por Swapna, Lakshmipuram S, Srinivasan, Narayanaswamy, Robertson, David L, Lovell, Simon C
Publicado 2012

Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

por Swapna, Lakshmipuram Seshadri, Molinaro, Alyssa M., Lindsay-Mosher, Nicole, Pearson, Bret J., Parkinson, John
Publicado 2018

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya

por Cromar, Graham L., Zhao, Anthony, Xiong, Xuejian, Swapna, Lakshmipuram S., Loughran, Noeleen, Song, Hongyan, Parkinson, John
Publicado 2016

Systems-Based Analysis of the Sarcocystis neurona Genome Identifies Pathways That Contribute to a Heteroxenous Life Cycle

por Blazejewski, Tomasz, Nursimulu, Nirvana, Pszenny, Viviana, Dangoudoubiyam, Sriveny, Namasivayam, Sivaranjani, Chiasson, Melissa A., Chessman, Kyle, Tonkin, Michelle, Swapna, Lakshmipuram S., Hung, Stacy S., Bridgers, Joshua, Ricklefs, Stacy M., Boulanger, Martin J., Dubey, Jitender P., Porcella, Stephen F., Kissinger, Jessica C., Howe, Daniel K., Grigg, Michael E., Parkinson, John
Publicado 2015

Protein flexibility in the light of structural alphabets

por Craveur, Pierrick, Joseph, Agnel P., Esque, Jeremy, Narwani, Tarun J., Noël, Floriane, Shinada, Nicolas, Goguet, Matthieu, Leonard, Sylvain, Poulain, Pierre, Bertrand, Olivier, Faure, Guilhem, Rebehmed, Joseph, Ghozlane, Amine, Swapna, Lakshmipuram S., Bhaskara, Ramachandra M., Barnoud, Jonathan, Téletchéa, Stéphane, Jallu, Vincent, Cerny, Jiri, Schneider, Bohdan, Etchebest, Catherine, Srinivasan, Narayanaswamy, Gelly, Jean-Christophe, de Brevern, Alexandre G.
Publicado 2015

The genome of Onchocerca volvulus, agent of river blindness

por Cotton, James A., Bennuru, Sasisekhar, Grote, Alexandra, Harsha, Bhavana, Tracey, Alan, Beech, Robin, Doyle, Stephen R., Dunn, Matthew, Dunning Hotopp, Julie C., Holroyd, Nancy, Kikuchi, Taisei, Lambert, Olivia, Mhashilkar, Amruta, Mutowo, Prudence, Nursimulu, Nirvana, Ribeiro, Jose M. C., Rogers, Matthew B., Stanley, Eleanor, Swapna, Lakshmipuram S., Tsai, Isheng J., Unnasch, Thomas R., Voronin, Denis, Parkinson, John, Nutman, Thomas B., Ghedin, Elodie, Berriman, Matthew, Lustigman, Sara
Publicado 2016

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

por Lorenzi, Hernan, Khan, Asis, Behnke, Michael S., Namasivayam, Sivaranjani, Swapna, Lakshmipuram S., Hadjithomas, Michalis, Karamycheva, Svetlana, Pinney, Deborah, Brunk, Brian P., Ajioka, James W., Ajzenberg, Daniel, Boothroyd, John C., Boyle, Jon P., Dardé, Marie L., Diaz-Miranda, Maria A., Dubey, Jitender P., Fritz, Heather M., Gennari, Solange M., Gregory, Brian D., Kim, Kami, Saeij, Jeroen P. J., Su, Chunlei, White, Michael W., Zhu, Xing-Quan, Howe, Daniel K., Rosenthal, Benjamin M., Grigg, Michael E., Parkinson, John, Liu, Liang, Kissinger, Jessica C., Roos, David S., David Sibley, L
Publicado 2016